Project measure / variable:   Hackstein1   T_CD4

ID, description, units MPD:49116   T_CD4   bronchoalveolar lavage CD3+ CD4+ T cells (percentage of CD45+ cells)   [%]  
Data set, strains Hackstein1   inbred   5 strains     sex: m     age: 7-11wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means14.2   %
Median of the strain means12.7   %
SD of the strain means± 3.47
Coefficient of variation (CV)0.244
Min–max range of strain means11.1   –   19.2   %
Mean sample size per strain8.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 412.6964 103.1741 11.2538 < 0.0001
Residuals 38 348.38 9.1679


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S2/SvPasCrl m 16.3 4.27   8 1.51 0.262 10.0, 21.9 0.61
BALB/cAnNCrl m 19.2 2.57   9 0.856 0.134 16.2, 24.5 1.45
C3H/HeNCrl m 11.1 1.93   9 0.642 0.173 7.69, 13.7 -0.89
C57BL/6NCrl m 11.6 3.34   8 1.18 0.287 5.29, 14.9 -0.74
DBA/2NCrl m 12.7 2.75   9 0.918 0.217 10.0, 19.6 -0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S2/SvPasCrl m 16.2537 1.0705 18.4209 14.0866
BALB/cAnNCrl m 19.1578 1.0093 21.201 17.1146
C3H/HeNCrl m 11.1422 1.0093 13.1854 9.099
C57BL/6NCrl m 11.6162 1.0705 13.7834 9.4491
DBA/2NCrl m 12.7022 1.0093 14.7454 10.659




GWAS analysis not available: SNP data is not available for enough strains (at least 4)