Project measure / variable:   Hackstein1   Lin_neg_90_neg

ID, description, units MPD:49112   Lin_neg_90_neg   bronchoalveolar lavage Linneg CD90- innate cells (percentage of CD45+ cells)   [%]  
Data set, strains Hackstein1   inbred   5 strains     sex: m     age: 7-11wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Hackstein1 - bronchoalveolar lavage Linneg CD90- innate cells (percentage of CD45+ cells)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested5 strains
Mean of the strain means0.714   %
Median of the strain means0.695   %
SD of the strain means± 0.338
Coefficient of variation (CV)0.474
Min–max range of strain means0.342   –   1.25   %
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 4 2.7497 0.6874 5.0221 0.0044
Residuals 24 3.2852 0.1369


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S2/SvPasCrl m 0.538 0.272   5 0.122 0.506 0.09, 0.78 -0.52
BALB/cAnNCrl m 0.695 0.12   6 0.0492 0.173 0.57, 0.89 -0.06
C3H/HeNCrl m 1.25 0.557   6 0.227 0.444 0.6, 1.84 1.58
C57BL/6NCrl m 0.342 0.305   6 0.125 0.893 0.1, 0.78 -1.1
DBA/2NCrl m 0.747 0.424   6 0.173 0.568 0.45, 1.6 0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S2/SvPasCrl m 0.538 0.1655 0.8795 0.1965
BALB/cAnNCrl m 0.695 0.151 1.0067 0.3833
C3H/HeNCrl m 1.255 0.151 1.5667 0.9433
C57BL/6NCrl m 0.3417 0.151 0.6534 0.0299
DBA/2NCrl m 0.7467 0.151 1.0584 0.4349




GWAS analysis not available: SNP data is not available for enough strains (at least 4)