Phenotype measure:   Haston1   BAL_lym



  STRAIN COMPARISON PLOT
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Haston1 - percentage of lymphocytes in bronchoalveolar lavage



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested20 strains16 strains
Mean of the strain means18.8   % 16.3   %
Median of the strain means18.1   % 16.4   %
SD of the strain means± 7.19 ± 5.77
Coefficient of variation (CV)0.383 0.353
Min–max range of strain means5.66   –   33.9   % 7.59   –   30.4   %
Mean sample size per strain5.9   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 735.6777 735.6777 11.9998 0.0008
strain 8 3177.4066 397.1758 6.4784 < 0.0001
sex:strain 8 537.4451 67.1806 1.0958 0.3747
Residuals 82 5027.233 61.3077


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 18.9 6.08   6 2.48 0.321 8.19, 25.5 0.02
129S1/SvImJ m 18.4 8.28   7 3.13 0.451 9.0, 31.6 0.36
A/J f 18.7 12.2   4 6.09 0.652 10.5, 36.8 -0.01
A/J m 13.5 2.96   5 1.32 0.219 10.4, 17.3 -0.49
AKR/J f 18.9 9.07   8 3.21 0.481 5.2, 30.2 0.02
AKR/J m 16.5 11.7   6 4.77 0.708 4.74, 36.6 0.03
BALB/cJ f 16.9 6.46   5 2.89 0.383 6.0, 22.0 -0.26
BTBR T+ Itpr3tf/J f 33.9 3.67   2   2.59 0.108 31.4, 36.5 2.1
BTBR T+ Itpr3tf/J m 19.5 7.1   6 2.9 0.363 14.9, 33.2 0.55
BUB/BnJ f 19.6 12.9   6 5.27 0.659 8.2, 42.0 0.12
C3H/HeJ f 17.6 8.87   8 3.14 0.504 5.62, 33.8 -0.16
C57BL/6J f 5.66 0.0   1   0.0 0.0 5.66, 5.66 -1.82
C57BL/6J m 14.6 9.94   8 3.51 0.681 6.44, 36.6 -0.3
C57BLKS/J m 18.8 5.54   5 2.48 0.295 11.4, 26.5 0.43
C58/J f 20.4 4.82   9 1.61 0.236 13.0, 27.8 0.23
CBA/J m 12.4 4.92   5 2.2 0.398 6.2, 19.8 -0.68
CE/J f 14.5 8.16   8 2.89 0.561 5.39, 31.2 -0.59
DBA/2J f 14.1 5.22   10 1.65 0.371 7.86, 24.6 -0.65
DBA/2J m 7.59 4.48   9 1.49 0.59 2.49, 15.7 -1.52
FVB/NJ f 13.1 5.76   7 2.18 0.441 7.29, 24.2 -0.79
FVB/NJ m 8.54 5.2   6 2.12 0.609 1.79, 15.3 -1.35
I/LnJ f 25.5 6.14   8 2.17 0.241 17.4, 33.4 0.94
KK/HlJ f 32.2 13.2   4 6.62 0.412 21.0, 48.6 1.87
KK/HlJ m 20.8 12.5   4 6.26 0.602 6.33, 36.7 0.77
LG/J f 12.1 4.28   10 1.35 0.354 6.0, 18.2 -0.93
LP/J m 16.2 7.16   3 4.13 0.442 11.2, 24.4 -0.03
MA/MyJ f 11.0 5.6   7 2.11 0.507 2.55, 16.9 -1.08
NOD/ShiLtJ f 24.1 4.76   4 2.38 0.198 17.0, 27.3 0.74
NOD/ShiLtJ m 10.3 9.82   7 3.71 0.958 1.1, 29.7 -1.05
NON/ShiLtJ f 12.9 1.68   3 0.969 0.13 11.0, 14.1 -0.81
NZB/BlNJ m 21.4 10.1   2   7.16 0.473 14.2, 28.5 0.88
NZW/LacJ f 28.9 3.46   3 2.0 0.12 24.9, 31.2 1.41
NZW/LacJ m 30.4 4.33   2   3.06 0.142 27.4, 33.5 2.44
PL/J f 16.3 2.03   4 1.01 0.124 14.1, 19.0 -0.34
SJL/J m 20.5 10.6   3 6.11 0.515 10.6, 31.6 0.72
SM/J m 12.1 2.26   3 1.3 0.187 10.8, 14.7 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 18.9492 3.1966 25.3081 12.5902
129S1/SvImJ m 18.3646 2.9594 24.2518 12.4773
A/J f 18.69 3.915 26.4781 10.9019
A/J m 13.524 3.5016 20.4899 6.5581
AKR/J f 18.8657 2.7683 24.3728 13.3587
AKR/J m 16.517 3.1966 22.876 10.158
BTBR T+ Itpr3tf/J f 33.945 5.5366 44.959 22.931
BTBR T+ Itpr3tf/J m 19.5467 3.1966 25.9056 13.1877
DBA/2J f 14.0832 2.476 19.0088 9.1576
DBA/2J m 7.5949 2.61 12.787 2.4028
FVB/NJ f 13.0571 2.9594 18.9444 7.1699
FVB/NJ m 8.5352 3.1966 14.8941 2.1762
KK/HlJ f 32.1575 3.915 39.9456 24.3694
KK/HlJ m 20.8105 3.915 28.5986 13.0224
NOD/ShiLtJ f 24.075 3.915 31.8631 16.2869
NOD/ShiLtJ m 10.2541 2.9594 16.1414 4.3669
NZW/LacJ f 28.88 4.5206 37.8729 19.8871
NZW/LacJ m 30.44 5.5366 41.454 19.426


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 18.6569 2.1781 22.9898 14.324
A/J both 16.107 2.6262 21.3314 10.8826
AKR/J both 17.6914 2.1143 21.8974 13.4853
BTBR T+ Itpr3tf/J both 26.7458 3.1966 33.1048 20.3869
DBA/2J both 10.839 1.7988 14.4174 7.2607
FVB/NJ both 10.7962 2.1781 15.1291 6.4633
KK/HlJ both 26.484 2.7683 31.991 20.977
NOD/ShiLtJ both 17.1646 2.4538 22.046 12.2831
NZW/LacJ both 29.66 3.5739 36.7695 22.5505




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.