Phenotype measure:   Brugnara1   retic

ID, description, units MPD:47411   retic   reticulocyte differential (Retic; percentage of total RBC)   [%]
Data set, strains Brugnara1   inbred   10 strains     sex: both     age: 8wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Brugnara1 - reticulocyte differential (Retic; percentage of total RBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means2.75   % 2.76   %
Median of the strain means2.56   % 2.53   %
SD of the strain means± 1.03 ± 0.661
Coefficient of variation (CV)0.375 0.239
Min–max range of strain means1.81   –   5.48   % 2.18   –   4.09   %
Mean sample size per strain31.6   mice 28.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4831 0.4831 0.8609 0.3539
strain 9 364.869 40.541 72.2458 < 0.0001
sex:strain 9 40.4876 4.4986 8.0167 < 0.0001
Residuals 588 329.9585 0.5612


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.48 0.79   33 0.137 0.319 1.27, 3.97 -0.26
129S1/SvImJ m 2.18 0.545   29 0.101 0.25 1.08, 3.41 -0.88
A/J f 2.63 0.803   36 0.134 0.306 1.2, 4.96 -0.12
A/J m 2.49 0.44   31 0.079 0.177 1.52, 3.28 -0.41
BALB/cJ f 2.77 0.469   26 0.092 0.169 1.9, 3.68 0.02
BALB/cJ m 3.1 0.973   29 0.181 0.314 2.14, 6.79 0.51
C3H/HeJ f 2.77 0.629   30 0.115 0.227 1.58, 3.88 0.02
C3H/HeJ m 2.78 0.367   25 0.0735 0.132 2.07, 3.72 0.03
C57BL/6J f 2.5 0.371   35 0.0627 0.148 1.81, 3.68 -0.24
C57BL/6J m 2.56 0.46   31 0.0826 0.18 1.8, 3.92 -0.31
C57BLKS/J f 2.2 0.722   32 0.128 0.328 0.75, 3.36 -0.53
C57BLKS/J m 2.37 0.41   39 0.0657 0.173 1.62, 3.51 -0.59
CBA/J f 1.89 0.579   32 0.102 0.306 0.77, 2.92 -0.84
CBA/J m 2.21 0.738   34 0.127 0.334 1.19, 4.98 -0.83
DBA/2J f 1.81 0.584   24 0.119 0.322 1.0, 2.92 -0.91
DBA/2J m 2.18 0.481   26 0.0943 0.221 1.43, 3.32 -0.88
NZW/LacJ f 5.48 1.21   32 0.213 0.22 3.16, 8.57 2.64
NZW/LacJ m 4.09 1.48   25 0.295 0.361 1.94, 8.1 2.01
SM/J f 2.99 0.874   33 0.152 0.293 2.0, 5.87 0.23
SM/J m 3.66 1.08   26 0.212 0.295 1.7, 6.0 1.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.4782 0.1304 2.7343 2.2221
129S1/SvImJ m 2.1814 0.1391 2.4546 1.9082
A/J f 2.6264 0.1249 2.8716 2.3812
A/J m 2.4919 0.1345 2.7562 2.2277
BALB/cJ f 2.7723 0.1469 3.0608 2.4838
BALB/cJ m 3.099 0.1391 3.3722 2.8258
C3H/HeJ f 2.767 0.1368 3.0356 2.4984
C3H/HeJ m 2.7796 0.1498 3.0738 2.4854
C57BL/6J f 2.5009 0.1266 2.7495 2.2522
C57BL/6J m 2.5568 0.1345 2.821 2.2925
C57BLKS/J f 2.2044 0.1324 2.4645 1.9443
C57BLKS/J m 2.3713 0.12 2.6069 2.1357
CBA/J f 1.8919 0.1324 2.152 1.6318
CBA/J m 2.2076 0.1285 2.46 1.9553
DBA/2J f 1.8146 0.1529 2.1149 1.5143
DBA/2J m 2.1781 0.1469 2.4666 1.8895
NZW/LacJ f 5.4756 0.1324 5.7357 5.2155
NZW/LacJ m 4.0916 0.1498 4.3858 3.7974
SM/J f 2.9876 0.1304 3.2437 2.7315
SM/J m 3.6646 0.1469 3.9531 3.3761


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.3298 0.0953 2.517 2.1425
A/J both 2.5592 0.0918 2.7394 2.3789
BALB/cJ both 2.9356 0.1012 3.1343 2.737
C3H/HeJ both 2.7733 0.1014 2.9725 2.5741
C57BL/6J both 2.5288 0.0924 2.7102 2.3474
C57BLKS/J both 2.2878 0.0893 2.4633 2.1124
CBA/J both 2.0498 0.0923 2.2309 1.8686
DBA/2J both 1.9963 0.106 2.2046 1.7881
NZW/LacJ both 4.7836 0.1 4.98 4.5873
SM/J both 3.3261 0.0982 3.519 3.1332




  GWAS USING LINEAR MIXED MODELS