Phenotype measure:   Chesler4   VC_bottom_transitions

ID, description, units MPD:47022   VC_bottom_transitions   number of top to bottom transitions, 20 min test   [n]
Data set, strains Chesler4   DO population w/par   9 strains     sex: both     age: 12-16wks
Procedure visual cliff
Ontology mappings

Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means40.4   n 35.0   n
Median of the strain means43.4   n 45.4   n
SD of the strain means± 25.8 ± 21.7
Coefficient of variation (CV)0.639 0.620
Min–max range of strain means5.75   –   70.6   n 2.60   –   54.1   n
Mean sample size per strain8.0   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5707.0889 5707.0889 7.3469 0.007
strain 8 69918.768 8739.846 11.2511 < 0.0001
sex:strain 8 2869.1971 358.6496 0.4617 0.8827
Residuals 381 295961.5375 776.8019


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.75 2.87   8 1.01 0.498 3.0, 11.0 -1.34
129S1/SvImJ m 4.71 3.04   7 1.15 0.645 -1.4
A/J f 7.0 6.0   4 3.0 0.857 2.0, 14.0 -1.29
A/J m 2.6 1.82   5 0.812 0.699 -1.49
C57BL/6J f 37.8 12.4   8 4.39 0.329 18.0, 58.0 -0.1
C57BL/6J m 45.4 18.1   7 6.84 0.398 25.0, 76.0 0.48
CAST/EiJ f 63.9 12.2   8 4.32 0.191 49.0, 79.0 0.91
CAST/EiJ m 52.4 26.3   8 9.29 0.502 26.0, 105.0 0.8
J:DO f 53.8 32.2   142 2.7 0.598 1.0, 134.0 0.52
J:DO m 45.3 30.5   138 2.59 0.672 1.0, 165.0 0.48
NOD/ShiLtJ f 70.6 16.3   8 5.77 0.231 44.0, 99.0 1.17
NOD/ShiLtJ m 54.1 15.8   8 5.58 0.291 25.0, 79.0 0.88
NZO/HlLtJ f 14.6 7.63   8 2.7 0.522 6.0, 24.0 -1.0
NZO/HlLtJ m 12.2 2.71   8 0.959 0.221 9.0, 18.0 -1.05
PWK/PhJ f 43.4 18.5   8 6.53 0.426 22.0, 70.0 0.12
PWK/PhJ m 49.9 12.9   8 4.56 0.259 31.0, 71.0 0.69
WSB/EiJ f 66.5 25.1   8 8.87 0.377 40.0, 110.0 1.01
WSB/EiJ m 48.0 15.3   8 5.41 0.318 32.0, 70.0 0.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.75 9.8539 25.1249 0.0
129S1/SvImJ m 4.7143 10.5343 25.427 0.0
A/J f 7.0 13.9356 34.4003 0.0
A/J m 2.6 12.4644 27.1076 0.0
C57BL/6J f 37.75 9.8539 57.1249 18.3751
C57BL/6J m 45.4286 10.5343 66.1412 24.7159
CAST/EiJ f 63.875 9.8539 83.2499 44.5001
CAST/EiJ m 52.375 9.8539 71.7499 33.0001
J:DO f 53.8239 2.3389 58.4227 49.2252
J:DO m 45.3188 2.3726 49.9838 40.6539
NOD/ShiLtJ f 70.625 9.8539 89.9999 51.2501
NOD/ShiLtJ m 54.125 9.8539 73.4999 34.7501
NZO/HlLtJ f 14.625 9.8539 33.9999 0.0
NZO/HlLtJ m 12.25 9.8539 31.6249 0.0
PWK/PhJ f 43.375 9.8539 62.7499 24.0001
PWK/PhJ m 49.875 9.8539 69.2499 30.5001
WSB/EiJ f 66.5 9.8539 85.8749 47.1251
WSB/EiJ m 48.0 9.8539 67.3749 28.6251


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.2321 7.2123 19.4131 0.0
A/J both 4.8 9.3483 23.1807 0.0
C57BL/6J both 41.5893 7.2123 55.7703 27.4083
CAST/EiJ both 58.125 6.9678 71.8251 44.4249
J:DO both 49.5714 1.6658 52.8467 46.2961
NOD/ShiLtJ both 62.375 6.9678 76.0751 48.6749
NZO/HlLtJ both 13.4375 6.9678 27.1376 0.0
PWK/PhJ both 46.625 6.9678 60.3251 32.9249
WSB/EiJ both 57.25 6.9678 70.9501 43.5499




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA