Project measure / variable:   Chesler4   VC_bottom_time_pct

ID, description, units MPD:47020   VC_bottom_time_pct   percentage of time in bottom, 20 min test   [%]  
Data set, strains Chesler4   DO population w/par   9 strains     sex: both     age: 12-16wks
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Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means31.6   % 34.5   %
Median of the strain means37.6   % 37.2   %
SD of the strain means± 16.7 ± 11.2
Coefficient of variation (CV)0.529 0.325
Min–max range of strain means3.60   –   47.8   % 16.9   –   46.3   %
Mean sample size per strain8.0   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 620.8371 620.8371 2.17 0.1416
strain 8 20759.6739 2594.9592 9.0701 < 0.0001
sex:strain 8 1301.4359 162.6795 0.5686 0.8037
Residuals 381 109004.5183 286.1011


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.91 3.13   8 1.11 0.8 1.27, 11.0 -1.66
129S1/SvImJ m 16.9 25.9   7 9.79 1.53 1.91, 70.7 -1.57
A/J f 3.6 1.18   4 0.588 0.327 2.47, 5.14 -1.68
A/J m 17.4 28.3   5 12.7 1.62 1.25, 67.1 -1.52
C57BL/6J f 44.5 7.38   8 2.61 0.166 34.3, 54.9 0.77
C57BL/6J m 37.2 9.96   7 3.77 0.268 19.5, 49.1 0.25
CAST/EiJ f 47.8 10.1   8 3.57 0.211 30.4, 56.9 0.97
CAST/EiJ m 45.0 13.9   8 4.9 0.308 26.2, 68.2 0.94
J:DO f 30.1 17.2   142 1.44 0.571 0.04, 66.3 -0.09
J:DO m 32.8 18.7   138 1.59 0.57 0.02, 78.2 -0.15
NOD/ShiLtJ f 42.6 7.99   8 2.83 0.188 30.4, 57.9 0.66
NOD/ShiLtJ m 46.3 14.0   8 4.94 0.302 20.8, 63.4 1.06
NZO/HlLtJ f 33.0 13.0   8 4.58 0.393 17.1, 50.8 0.08
NZO/HlLtJ m 30.1 16.6   8 5.87 0.551 11.6, 57.1 -0.39
PWK/PhJ f 37.6 13.0   8 4.58 0.345 15.2, 54.1 0.36
PWK/PhJ m 41.5 14.4   8 5.09 0.347 22.2, 61.2 0.63
WSB/EiJ f 41.4 7.61   8 2.69 0.184 31.0, 52.1 0.59
WSB/EiJ m 42.9 12.8   8 4.52 0.299 23.2, 57.6 0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.9063 5.9802 15.6646 0.0
129S1/SvImJ m 16.89 6.3931 29.4602 4.3198
A/J f 3.6 8.4573 20.2288 0.0
A/J m 17.44 7.5644 32.3132 2.5668
C57BL/6J f 44.5225 5.9802 56.2808 32.7642
C57BL/6J m 37.2257 6.3931 49.7959 24.6556
CAST/EiJ f 47.7862 5.9802 59.5446 36.0279
CAST/EiJ m 44.955 5.9802 56.7133 33.1967
J:DO f 30.1131 1.4194 32.904 27.3222
J:DO m 32.7575 1.4399 35.5886 29.9265
NOD/ShiLtJ f 42.5875 5.9802 54.3458 30.8292
NOD/ShiLtJ m 46.2587 5.9802 58.0171 34.5004
NZO/HlLtJ f 32.9913 5.9802 44.7496 21.2329
NZO/HlLtJ m 30.1463 5.9802 41.9046 18.3879
PWK/PhJ f 37.6138 5.9802 49.3721 25.8554
PWK/PhJ m 41.52 5.9802 53.2783 29.7617
WSB/EiJ f 41.38 5.9802 53.1383 29.6217
WSB/EiJ m 42.8525 5.9802 54.6108 31.0942


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.3981 4.377 19.0043 1.7919
A/J both 10.52 5.6733 21.6749 0.0
C57BL/6J both 40.8741 4.377 49.4803 32.2679
CAST/EiJ both 46.3706 4.2286 54.685 38.0562
J:DO both 31.4353 1.0109 33.423 29.4476
NOD/ShiLtJ both 44.4231 4.2286 52.7375 36.1087
NZO/HlLtJ both 31.5688 4.2286 39.8831 23.2544
PWK/PhJ both 39.5669 4.2286 47.8813 31.2525
WSB/EiJ both 42.1163 4.2286 50.4306 33.8019




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA