Phenotype measure:   Chesler4   VC_top_velocity

ID, description, units MPD:47015   VC_top_velocity   mean velocity in top, 20 min test   [cm/s]
Data set, strains Chesler4   DO population w/par   9 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Chesler4 - mean velocity in top, 20 min test



Distribution plot of DO animal values


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means6.23   cm/s 6.09   cm/s
Median of the strain means6.04   cm/s 6.94   cm/s
SD of the strain means± 3.50 ± 2.33
Coefficient of variation (CV)0.561 0.382
Min–max range of strain means1.69   –   10.5   cm/s 2.50   –   8.38   cm/s
Mean sample size per strain8.0   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.6081 4.6081 0.6473 0.4216
strain 8 1028.8944 128.6118 18.0652 < 0.0001
sex:strain 8 69.8537 8.7317 1.2265 0.282
Residuals 381 2712.4575 7.1193


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.1 0.683   8 0.241 0.325 1.11, 3.47 -1.18
129S1/SvImJ m 2.7 2.47   7 0.935 0.915 0.93, 8.05 -1.46
A/J f 1.69 0.665   4 0.333 0.395 1.0, 2.28 -1.3
A/J m 4.84 7.42   5 3.32 1.53 0.99, 18.1 -0.54
C57BL/6J f 5.12 0.973   8 0.344 0.19 3.72, 6.77 -0.32
C57BL/6J m 5.6 1.7   7 0.644 0.304 3.27, 7.82 -0.21
CAST/EiJ f 10.1 1.19   8 0.421 0.118 8.09, 12.1 1.1
CAST/EiJ m 8.38 3.09   8 1.09 0.368 4.37, 13.3 0.99
J:DO f 7.33 2.9   142 0.243 0.396 2.15, 14.6 0.31
J:DO m 7.16 2.73   138 0.232 0.381 1.82, 14.2 0.46
NOD/ShiLtJ f 10.5 1.67   8 0.592 0.159 7.46, 12.9 1.22
NOD/ShiLtJ m 8.38 1.72   8 0.609 0.206 5.07, 11.3 0.99
NZO/HlLtJ f 3.13 0.586   8 0.207 0.187 1.84, 3.68 -0.89
NZO/HlLtJ m 2.5 0.46   8 0.163 0.184 1.94, 3.23 -1.54
PWK/PhJ f 6.04 1.78   8 0.628 0.294 3.57, 9.12 -0.06
PWK/PhJ m 6.94 1.26   8 0.445 0.181 5.18, 9.33 0.37
WSB/EiJ f 10.1 2.53   8 0.893 0.251 6.92, 14.1 1.1
WSB/EiJ m 8.27 1.72   8 0.607 0.207 6.43, 10.4 0.94


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.1013 0.9434 3.9561 0.2464
129S1/SvImJ m 2.7043 1.0085 4.6872 0.7214
A/J f 1.685 1.3341 4.3081 0.0
A/J m 4.84 1.1933 7.1862 2.4938
C57BL/6J f 5.12 0.9434 6.9748 3.2652
C57BL/6J m 5.5957 1.0085 7.5786 3.6128
CAST/EiJ f 10.115 0.9434 11.9698 8.2602
CAST/EiJ m 8.3812 0.9434 10.2361 6.5264
J:DO f 7.3287 0.2239 7.7689 6.8884
J:DO m 7.1637 0.2271 7.6103 6.7171
NOD/ShiLtJ f 10.5362 0.9434 12.3911 8.6814
NOD/ShiLtJ m 8.375 0.9434 10.2298 6.5202
NZO/HlLtJ f 3.1263 0.9434 4.9811 1.2714
NZO/HlLtJ m 2.5025 0.9434 4.3573 0.6477
PWK/PhJ f 6.0363 0.9434 7.8911 4.1814
PWK/PhJ m 6.9438 0.9434 8.7986 5.0889
WSB/EiJ f 10.075 0.9434 11.9298 8.2202
WSB/EiJ m 8.2725 0.9434 10.1273 6.4177


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.4028 0.6905 3.7604 1.0452
A/J both 3.2625 0.8949 5.0221 1.5029
C57BL/6J both 5.3579 0.6905 6.7155 4.0003
CAST/EiJ both 9.2481 0.6671 10.5597 7.9366
J:DO both 7.2462 0.1595 7.5597 6.9326
NOD/ShiLtJ both 9.4556 0.6671 10.7672 8.1441
NZO/HlLtJ both 2.8144 0.6671 4.1259 1.5028
PWK/PhJ both 6.49 0.6671 7.8016 5.1784
WSB/EiJ both 9.1738 0.6671 10.4853 7.8622




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.