Phenotype measure:   Chesler4   VC_top_time_pct

ID, description, units MPD:47014   VC_top_time_pct   percentage of time in top, 20 min test   [%]
Data set, strains Chesler4   DO population w/par   9 strains     sex: both     age: 12-16wks
Procedure visual cliff
Ontology mappings


  STRAIN COMPARISON PLOT
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Chesler4 - percentage of time in top, 20 min test



Distribution plot of DO animal values


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means58.8   % 57.3   %
Median of the strain means53.0   % 56.3   %
SD of the strain means± 16.3 ± 14.2
Coefficient of variation (CV)0.276 0.248
Min–max range of strain means36.9   –   86.9   % 41.1   –   80.9   %
Mean sample size per strain8.0   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 440.3789 440.3789 1.4793 0.2246
strain 8 36058.5742 4507.3218 15.1409 < 0.0001
sex:strain 8 758.1143 94.7643 0.3183 0.959
Residuals 381 113420.213 297.6908


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 77.4 26.7   8 9.45 0.345 22.8, 97.8 1.14
129S1/SvImJ m 71.2 29.3   7 11.1 0.412 19.7, 95.6 0.98
A/J f 86.9 12.7   4 6.34 0.146 69.0, 97.5 1.73
A/J m 80.9 29.0   5 13.0 0.358 29.9, 98.7 1.66
C57BL/6J f 51.0 7.72   8 2.73 0.151 41.0, 60.8 -0.48
C57BL/6J m 56.3 9.82   7 3.71 0.175 46.2, 76.3 -0.07
CAST/EiJ f 36.9 5.16   8 1.82 0.14 25.8, 41.4 -1.35
CAST/EiJ m 41.6 8.52   8 3.01 0.205 29.6, 55.6 -1.11
J:DO f 69.6 17.2   142 1.45 0.248 33.6, 100.0 0.66
J:DO m 67.0 18.7   138 1.59 0.278 21.0, 100.0 0.68
NOD/ShiLtJ f 50.0 6.19   8 2.19 0.124 39.0, 56.7 -0.54
NOD/ShiLtJ m 47.9 15.8   8 5.59 0.33 33.1, 75.9 -0.67
NZO/HlLtJ f 60.0 14.4   8 5.1 0.241 42.2, 82.4 0.07
NZO/HlLtJ m 64.0 14.8   8 5.22 0.231 42.1, 82.5 0.47
PWK/PhJ f 53.0 12.0   8 4.23 0.226 34.2, 70.8 -0.36
PWK/PhJ m 46.1 12.9   8 4.56 0.28 30.1, 69.5 -0.79
WSB/EiJ f 44.4 9.31   8 3.29 0.21 27.2, 58.1 -0.89
WSB/EiJ m 41.1 7.4   8 2.62 0.18 31.2, 52.5 -1.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 77.3875 6.1001 89.3816 65.3934
129S1/SvImJ m 71.1814 6.5213 84.0037 58.3592
A/J f 86.92 8.6269 103.8822 69.9578
A/J m 80.852 7.7161 96.0235 65.6805
C57BL/6J f 50.9738 6.1001 62.9678 38.9797
C57BL/6J m 56.2657 6.5213 69.0879 43.4435
CAST/EiJ f 36.85 6.1001 48.8441 24.8559
CAST/EiJ m 41.6275 6.1001 53.6216 29.6334
J:DO f 69.6189 1.4479 72.4658 66.7721
J:DO m 67.0312 1.4687 69.9191 64.1434
NOD/ShiLtJ f 49.9588 6.1001 61.9528 37.9647
NOD/ShiLtJ m 47.9075 6.1001 59.9016 35.9134
NZO/HlLtJ f 59.9613 6.1001 71.9553 47.9672
NZO/HlLtJ m 64.0425 6.1001 76.0366 52.0484
PWK/PhJ f 53.02 6.1001 65.0141 41.0259
PWK/PhJ m 46.1388 6.1001 58.1328 34.1447
WSB/EiJ f 44.4125 6.1001 56.4066 32.4184
WSB/EiJ m 41.0763 6.1001 53.0703 29.0822


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 74.2845 4.4648 83.0632 65.5057
A/J both 83.886 5.7871 95.2646 72.5074
C57BL/6J both 53.6197 4.4648 62.3985 44.841
CAST/EiJ both 39.2388 4.3134 47.7199 30.7576
J:DO both 68.3251 1.0312 70.3527 66.2975
NOD/ShiLtJ both 48.9331 4.3134 57.4142 40.452
NZO/HlLtJ both 62.0019 4.3134 70.483 53.5208
PWK/PhJ both 49.5794 4.3134 58.0605 41.0983
WSB/EiJ both 42.7444 4.3134 51.2255 34.2633




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.