Phenotype measure:   Chesler4   LD_distance_light



Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means3107   cm 2780   cm
Median of the strain means2962   cm 2387   cm
SD of the strain means± 2059 ± 1614
Coefficient of variation (CV)0.663 0.580
Min–max range of strain means405   –   6038   cm 654   –   6055   cm
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2613987.5822 2613987.5822 1.1951 0.275
strain 8 367668786.6972 45958598.3371 21.0119 < 0.0001
sex:strain 8 71727066.3393 8965883.2924 4.0991 0.0001
Residuals 393 859596541.8648 2187268.5544


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 620.0 598.0   8 212.0 0.964 23.3, 1685.0 -1.21
129S1/SvImJ m 2301.0 2275.0   8 804.0 0.989 110.0, 4984.0 -0.3
A/J f 405.0 374.0   8 132.0 0.922 124.0, 1251.0 -1.31
A/J m 654.0 481.0   8 170.0 0.736 140.0, 1283.0 -1.32
C57BL/6J f 4477.0 725.0   8 256.0 0.162 3301.0, 5411.0 0.67
C57BL/6J m 3361.0 663.0   8 234.0 0.197 2509.0, 4094.0 0.36
CAST/EiJ f 5899.0 1360.0   8 481.0 0.231 3312.0, 7769.0 1.36
CAST/EiJ m 2387.0 2894.0   8 1023.0 1.21 23.2, 7927.0 -0.24
J:DO f 2962.0 1548.0   144 129.0 0.523 47.2, 6730.0 -0.07
J:DO m 2892.0 1557.0   139 132.0 0.538 70.2, 7195.0 0.07
NOD/ShiLtJ f 6038.0 1348.0   8 477.0 0.223 3480.0, 7445.0 1.42
NOD/ShiLtJ m 6055.0 1062.0   8 375.0 0.175 4924.0, 8389.0 2.03
NZO/HlLtJ f 1877.0 1133.0   8 401.0 0.604 495.0, 4067.0 -0.6
NZO/HlLtJ m 2075.0 518.0   8 183.0 0.249 1478.0, 2815.0 -0.44
PWK/PhJ f 2351.0 1562.0   8 552.0 0.665 254.0, 4856.0 -0.37
PWK/PhJ m 1177.0 793.0   8 280.0 0.674 396.0, 2860.0 -0.99
WSB/EiJ f 3330.0 896.0   8 317.0 0.269 2354.0, 4666.0 0.11
WSB/EiJ m 4115.0 774.0   8 274.0 0.188 3017.0, 5288.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 620.4688 522.8849 1648.4701 0.0
129S1/SvImJ m 2301.3113 522.8849 3329.3126 1273.3099
A/J f 405.3525 522.8849 1433.3539 0.0
A/J m 654.3338 522.8849 1682.3351 0.0
C57BL/6J f 4476.5775 522.8849 5504.5789 3448.5761
C57BL/6J m 3360.7987 522.8849 4388.8001 2332.7974
CAST/EiJ f 5899.4462 522.8849 6927.4476 4871.4449
CAST/EiJ m 2387.4612 522.8849 3415.4626 1359.4599
J:DO f 2961.5851 123.2451 3203.8873 2719.2828
J:DO m 2892.1211 125.4422 3138.7428 2645.4994
NOD/ShiLtJ f 6038.0775 522.8849 7066.0789 5010.0761
NOD/ShiLtJ m 6054.7537 522.8849 7082.7551 5026.7524
NZO/HlLtJ f 1876.8475 522.8849 2904.8489 848.8461
NZO/HlLtJ m 2075.2238 522.8849 3103.2251 1047.2224
PWK/PhJ f 2351.005 522.8849 3379.0064 1323.0036
PWK/PhJ m 1176.7525 522.8849 2204.7539 148.7511
WSB/EiJ f 3330.0363 522.8849 4358.0376 2302.0349
WSB/EiJ m 4115.1263 522.8849 5143.1276 3087.1249


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1460.89 369.7354 2187.7967 733.9833
A/J both 529.8431 369.7354 1256.7499 0.0
C57BL/6J both 3918.6881 369.7354 4645.5949 3191.7814
CAST/EiJ both 4143.4537 369.7354 4870.3605 3416.547
J:DO both 2926.8531 87.9277 3099.7205 2753.9856
NOD/ShiLtJ both 6046.4156 369.7354 6773.3224 5319.5089
NZO/HlLtJ both 1976.0356 369.7354 2702.9424 1249.1289
PWK/PhJ both 1763.8788 369.7354 2490.7855 1036.972
WSB/EiJ both 3722.5813 369.7354 4449.488 2995.6745




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.