Project measure / variable:   Boon1   resistance_hi

ID, description, units MPD:46933   resistance_hi   susceptibility to viral infection (0=susceptible, 1=resistant)   [designation]  dose group: high  
influenza A (H5N1) virus study
Data set, strains Boon1   inbred   21 strains     sex: f     age: 6-9wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Boon1 - susceptibility to viral infection (0=susceptible, 1=resistant) dose group: high



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested21 strains
Mean of the strain means0.242   designation
Median of the strain means0.133   designation
SD of the strain means± 0.288
Coefficient of variation (CV)1.19
Min–max range of strain means0   –   0.842   designation
Mean sample size per strain14.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 24.808 1.2404 7.6203 < 0.0001
Residuals 358 58.2738 0.1628


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   10 0.0 0.0 -0.84
129X1/SvJ f 0.0 0.0   5 0.0 0.0 -0.84
A/HeJ f 0.1 0.316   10 0.1 3.16 -0.49
A/J f 0.0 0.0   10 0.0 0.0 -0.84
AKR/J f 0.733 0.458   15 0.118 0.624 1.7
B10.D2-Hc0 f 0.0667 0.254   30 0.0463 3.81 -0.61
B10.D2-Hc1 f 0.158 0.375   19 0.0859 2.37 -0.29
B6D2F1/J f 0.15 0.366   20 0.0819 2.44 -0.32
BALB/cByJ f 0.667 0.482   24 0.0983 0.722 1.48
BALB/cJ f 0.842 0.375   19 0.0859 0.445 2.08
BTBR T+ Itpr3tf/J f 0.0 0.0   3 0.0 0.0 -0.84
C3H/HeJ f 0.0 0.0   15 0.0 0.0 -0.84
C57BL/6J f 0.413 0.495   104 0.0485 1.2 0.59
DBA/2J f 0.0667 0.258   15 0.0667 3.87 -0.61
FVB/NJ f 0.2 0.414   15 0.107 2.07 -0.15
KK/HlJ f 0.0 0.0   4 0.0 0.0 -0.84
LP/J f 0.0 0.0   4 0.0 0.0 -0.84
MRL/MpJ f 0.3 0.483   10 0.153 1.61 0.2
NOD/ShiLtJ f 0.75 0.452   12 0.131 0.603 1.76
NZW/LacJ f 0.133 0.352   15 0.0909 2.64 -0.38
SM/J f 0.5 0.513   20 0.115 1.03 0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.1276 0.2509 -0.2509
129X1/SvJ f 0.0 0.1804 0.3548 -0.3548
A/HeJ f 0.1 0.1276 0.3509 -0.1509
A/J f 0.0 0.1276 0.2509 -0.2509
AKR/J f 0.7333 0.1042 0.9382 0.5285
B10.D2-Hc0 f 0.0667 0.0737 0.2115 -0.0782
B10.D2-Hc1 f 0.1579 0.0926 0.3399 -0.0241
B6D2F1/J f 0.15 0.0902 0.3274 -0.0274
BALB/cByJ f 0.6667 0.0824 0.8286 0.5047
BALB/cJ f 0.8421 0.0926 1.0241 0.6601
BTBR T+ Itpr3tf/J f 0.0 0.2329 0.4581 -0.4581
C3H/HeJ f 0.0 0.1042 0.2049 -0.2049
C57BL/6J f 0.4135 0.0396 0.4913 0.3357
DBA/2J f 0.0667 0.1042 0.2715 -0.1382
FVB/NJ f 0.2 0.1042 0.4049 -0.0049
KK/HlJ f 0.0 0.2017 0.3967 -0.3967
LP/J f 0.0 0.2017 0.3967 -0.3967
MRL/MpJ f 0.3 0.1276 0.5509 0.0491
NOD/ShiLtJ f 0.75 0.1165 0.979 0.521
NZW/LacJ f 0.1333 0.1042 0.3382 -0.0715
SM/J f 0.5 0.0902 0.6774 0.3226




  GWAS USING LINEAR MIXED MODELS