Project measure / variable:   Boon1   resistance_med

ID, description, units MPD:46932   resistance_med   susceptibility to viral infection (0=susceptible, 1=resistant)   [designation]  dose group: medium  
influenza A (H5N1) virus study
Data set, strains Boon1   inbred   22 strains     sex: f     age: 6-9wks
Procedure health assessment
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  STRAIN COMPARISON PLOT
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Boon1 - susceptibility to viral infection (0=susceptible, 1=resistant) dose group: medium



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested22 strains
Mean of the strain means0.571   designation
Median of the strain means0.725   designation
SD of the strain means± 0.430
Coefficient of variation (CV)0.754
Min–max range of strain means0   –   1.00   designation
Mean sample size per strain10.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 55.1514 2.6263 31.1292 < 0.0001
Residuals 309 26.0692 0.0844


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   12 0.0 0.0 -1.33
129X1/SvJ f 0.0 0.0   5 0.0 0.0 -1.33
A/HeJ f 0.4 0.516   10 0.163 1.29 -0.4
A/J f 0.0 0.0   10 0.0 0.0 -1.33
AKR/J f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.0
B10.D2-Hc0 f 0.467 0.516   15 0.133 1.11 -0.24
B10.D2-Hc1 f 0.889 0.333   9 0.111 0.375 0.74
B6D2F1/J f 0.867 0.352   15 0.0909 0.406 0.69
BALB/cByJ f 1.0 0.0   10 0.0 0.0 1.0, 1.0 1.0
BALB/cJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.0
BTBR T+ Itpr3tf/J f 0.0 0.0   8 0.0 0.0 -1.33
C3H/HeJ f 0.7 0.483   10 0.153 0.69 0.3
C57BL/6J f 0.882 0.324   110 0.0309 0.368 0.72
DBA/2J f 0.0 0.0   55 0.0 0.0 -1.33
FVB/NJ f 0.9 0.316   10 0.1 0.351 0.77
KK/HlJ f 0.75 0.5   4 0.25 0.667 0.42
LP/J f 0.0 0.0   9 0.0 0.0 -1.33
MRL/MpJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.0
NOD/ShiLtJ f 1.0 0.0   5 0.0 0.0 1.0, 1.0 1.0
NZB/BlNJ f 0.0 0.0   6 0.0 0.0 -1.33
NZW/LacJ f 0.7 0.483   10 0.153 0.69 0.3
SM/J f 1.0 0.0   3 0.0 0.0 1.0, 1.0 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0838 0.165 -0.165
129X1/SvJ f 0.0 0.1299 0.2556 -0.2556
A/HeJ f 0.4 0.0919 0.5807 0.2193
A/J f 0.0 0.0919 0.1807 -0.1807
AKR/J f 1.0 0.1299 1.2556 0.7444
B10.D2-Hc0 f 0.4667 0.075 0.6142 0.3191
B10.D2-Hc1 f 0.8889 0.0968 1.0794 0.6984
B6D2F1/J f 0.8667 0.075 1.0142 0.7191
BALB/cByJ f 1.0 0.0919 1.1807 0.8193
BALB/cJ f 1.0 0.1299 1.2556 0.7444
BTBR T+ Itpr3tf/J f 0.0 0.1027 0.2021 -0.2021
C3H/HeJ f 0.7 0.0919 0.8807 0.5193
C57BL/6J f 0.8818 0.0277 0.9363 0.8273
DBA/2J f 0.0 0.0392 0.0771 -0.0771
FVB/NJ f 0.9 0.0919 1.0807 0.7193
KK/HlJ f 0.75 0.1452 1.0358 0.4642
LP/J f 0.0 0.0968 0.1905 -0.1905
MRL/MpJ f 1.0 0.1299 1.2556 0.7444
NOD/ShiLtJ f 1.0 0.1299 1.2556 0.7444
NZB/BlNJ f 0.0 0.1186 0.2333 -0.2333
NZW/LacJ f 0.7 0.0919 0.8807 0.5193
SM/J f 1.0 0.1677 1.33 0.67




  GWAS USING LINEAR MIXED MODELS