Project measure / variable:   Boon1   bw_change_hi

ID, description, units MPD:46913   bw_change_hi   change in body weight, post-infection   [%]  dose group: high  
influenza A (H5N1) virus study
Data set, strains Boon1   inbred   21 strains     sex: f     age: 6-9wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Boon1 - change in body weight, post-infection dose group: high



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested21 strains
Mean of the strain means80.7   %
Median of the strain means78.5   %
SD of the strain means± 5.28
Coefficient of variation (CV)0.0654
Min–max range of strain means73.7   –   93.2   %
Mean sample size per strain14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 9675.1771 483.7589 8.286 < 0.0001
Residuals 354 20667.4888 58.3827


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 78.2 5.12   10 1.62 0.0655 73.0, 88.7 -0.47
129X1/SvJ f 77.5 4.89   5 2.19 0.0632 70.5, 81.8 -0.6
A/HeJ f 77.1 2.68   10 0.846 0.0347 72.3, 81.8 -0.68
A/J f 77.0 2.25   10 0.711 0.0292 74.4, 80.6 -0.69
AKR/J f 93.2 12.3   15 3.18 0.132 72.2, 109.0 2.38
B10.D2-Hc0 f 76.3 3.81   30 0.696 0.05 70.1, 86.1 -0.83
B10.D2-Hc1 f 74.5 3.36   19 0.77 0.045 70.2, 81.9 -1.17
B6D2F1/J f 73.7 2.73   20 0.61 0.037 70.2, 79.2 -1.32
BALB/cByJ f 86.9 11.0   24 2.24 0.126 70.2, 106.0 1.18
BALB/cJ f 87.3 12.6   19 2.9 0.145 70.2, 105.0 1.26
BTBR T+ Itpr3tf/J f 83.2 3.88   3 2.24 0.0467 80.0, 87.5 0.48
C3H/HeJ f 79.3 4.37   15 1.13 0.0551 71.7, 85.4 -0.26
C57BL/6J f 77.6 8.64   102 0.856 0.111 70.0, 108.0 -0.58
DBA/2J f 78.5 5.02   13 1.39 0.064 73.1, 93.6 -0.41
FVB/NJ f 76.3 4.54   15 1.17 0.0595 70.4, 85.0 -0.83
KK/HlJ f 81.7 3.3   4 1.65 0.0404 77.0, 84.0 0.2
LP/J f 82.9 9.01   4 4.51 0.109 71.9, 91.2 0.42
MRL/MpJ f 81.1 7.47   10 2.36 0.092 70.7, 94.0 0.08
NOD/ShiLtJ f 89.0 10.4   12 3.0 0.117 71.1, 106.0 1.58
NZW/LacJ f 76.3 3.47   15 0.895 0.0455 70.1, 84.0 -0.83
SM/J f 86.4 7.74   20 1.73 0.0896 71.3, 97.5 1.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 78.18 2.4163 82.932 73.428
129X1/SvJ f 77.46 3.4171 84.1804 70.7396
A/HeJ f 77.14 2.4163 81.892 72.388
A/J f 77.04 2.4163 81.792 72.288
AKR/J f 93.1733 1.9729 97.0533 89.2933
B10.D2-Hc0 f 76.2967 1.395 79.0402 73.5531
B10.D2-Hc1 f 74.5474 1.7529 77.9948 71.0999
B6D2F1/J f 73.675 1.7085 77.0352 70.3148
BALB/cByJ f 86.9083 1.5597 89.9757 83.8409
BALB/cJ f 87.2684 1.7529 90.7159 83.8209
BTBR T+ Itpr3tf/J f 83.1667 4.4115 91.8426 74.4907
C3H/HeJ f 79.32 1.9729 83.2 75.44
C57BL/6J f 77.5892 0.7566 79.0771 76.1013
DBA/2J f 78.4615 2.1192 82.6293 74.2937
FVB/NJ f 76.2533 1.9729 80.1333 72.3733
KK/HlJ f 81.65 3.8204 89.1636 74.1364
LP/J f 82.925 3.8204 90.4386 75.4114
MRL/MpJ f 81.14 2.4163 85.892 76.388
NOD/ShiLtJ f 88.9583 2.2057 93.2963 84.6204
NZW/LacJ f 76.28 1.9729 80.16 72.4
SM/J f 86.39 1.7085 89.7502 83.0298




  GWAS USING LINEAR MIXED MODELS