Phenotype measure:   HMDPpheno4   precue_imob

ID, description, units MPD:46871   precue_imob   cued fear, percent time immobile, day 3   [%]  pre-cue
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno4 - cued fear, percent time immobile, day 3 pre-cue



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means20.7   %
Median of the strain means20.6   %
SD of the strain means± 10.7
Coefficient of variation (CV)0.517
Min–max range of strain means3.89   –   45.6   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 76122.5313 818.5218 3.7367 < 0.0001
Residuals 593 129895.9116 219.0488


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 6.92 5.85   4 2.93 0.846 3.74, 15.7 -1.29
A/J m 11.9 10.2   5 4.55 0.855 1.37, 22.7 -0.82
AKR/J m 6.61 2.26   8 0.799 0.342 3.01, 9.53 -1.32
AXB10/PgnJ m 29.6 7.31   3 4.22 0.247 25.4, 38.0 0.83
AXB12/PgnJ m 8.33 11.3   8 3.99 1.36 0.7, 33.6 -1.16
AXB13/PgnJ m 3.89 4.36   8 1.54 1.12 0.67, 14.3 -1.57
AXB15/PgnJ m 40.9 14.7   7 5.56 0.36 25.8, 68.7 1.89
AXB19a/PgnJ m 15.6 10.9   4 5.45 0.7 6.78, 31.0 -0.48
AXB19/PgnJ m 39.7 22.7   15 5.87 0.572 6.15, 87.2 1.77
AXB1/PgnJ m 36.3 7.34   8 2.6 0.202 26.3, 47.0 1.46
AXB23/PgnJ m 20.9 3.8   4 1.9 0.181 17.9, 25.9 0.02
AXB24/PgnJ m 33.7 23.6   6 9.65 0.701 3.52, 60.7 1.21
AXB2/PgnJ m 5.41 6.24   8 2.21 1.15 0.97, 20.0 -1.43
AXB4/PgnJ m 35.2 10.7   4 5.37 0.305 21.6, 47.5 1.35
AXB5/PgnJ m 33.7 24.0   8 8.48 0.713 5.08, 64.7 1.21
AXB6/PgnJ m 16.1 16.4   9 5.47 1.02 0.52, 43.1 -0.43
AXB8/PgnJ m 34.4 11.4   7 4.32 0.333 15.3, 47.8 1.28
B6cC3-1/KccJ m 10.7 18.3   7 6.93 1.72 0.56, 52.0 -0.94
BALB/cJ m 18.3 20.6   12 5.96 1.13 1.03, 56.5 -0.23
BTBR T+ Itpr3tf/J m 17.7 12.4   8 4.39 0.702 2.04, 36.9 -0.28
BUB/BnJ m 17.8 18.9   3 10.9 1.06 3.6, 39.2 -0.27
BXA12/PgnJ m 21.1 24.2   7 9.14 1.15 2.11, 57.3 0.04
BXA13/PgnJ m 7.77 10.4   10 3.29 1.34 1.22, 36.5 -1.21
BXA14/PgnJ m 12.2 15.9   10 5.03 1.3 0.44, 42.2 -0.8
BXA16/PgnJ m 10.2 12.7   7 4.81 1.24 1.67, 30.8 -0.98
BXA1/PgnJ m 14.2 9.84   3 5.68 0.693 3.23, 22.2 -0.61
BXA24/PgnJ m 30.9 20.4   6 8.33 0.661 5.37, 56.8 0.95
BXA25/PgnJ m 29.8 26.2   8 9.26 0.878 2.34, 67.4 0.85
BXA26/PgnJ m 4.21 2.5   8 0.885 0.594 2.15, 8.27 -1.54
BXA2/PgnJ m 23.8 20.3   8 7.19 0.854 3.38, 49.1 0.29
BXA4/PgnJ m 17.1 12.3   8 4.35 0.72 1.07, 35.5 -0.34
BXA7/PgnJ m 23.0 26.0   8 9.18 1.13 1.18, 61.8 0.21
BXA8/PgnJ m 12.5 6.53   8 2.31 0.522 1.82, 21.0 -0.77
BXD11/TyJ m 29.0 12.2   5 5.47 0.422 9.57, 40.2 0.77
BXD12/TyJ m 16.0 14.5   8 5.12 0.906 4.31, 45.1 -0.44
BXD13/TyJ m 21.3 36.7   4 18.3 1.73 2.11, 76.3 0.05
BXD14/TyJ m 26.2 12.8   8 4.52 0.488 8.08, 43.8 0.51
BXD15/TyJ m 34.9 24.8   6 10.1 0.712 8.23, 75.1 1.33
BXD16/TyJ m 19.8 14.5   6 5.93 0.735 10.1, 48.5 -0.09
BXD18/TyJ m 16.7 9.94   7 3.76 0.595 1.86, 31.0 -0.38
BXD19/TyJ m 23.9 18.7   7 7.05 0.781 9.78, 62.1 0.3
BXD1/TyJ m 20.5 12.5   7 4.72 0.61 5.26, 40.2 -0.02
BXD20/TyJ m 14.5 8.73   8 3.09 0.602 1.67, 28.0 -0.58
BXD21/TyJ m 30.8 7.36   6 3.0 0.239 23.1, 40.7 0.94
BXD24/TyJ m 33.6 19.9   4 9.97 0.593 16.6, 62.1 1.2
BXD27/TyJ m 18.7 14.4   8 5.09 0.77 4.75, 38.9 -0.19
BXD28/TyJ m 41.7 11.7   4 5.84 0.28 26.5, 54.4 1.96
BXD29-Tlr4lps-2J/J m 21.3 14.8   7 5.58 0.692 10.9, 50.7 0.05
BXD2/TyJ m 20.6 6.56   4 3.28 0.318 12.8, 27.4 -0.01
BXD31/TyJ m 6.04 1.29   4 0.644 0.213 4.75, 7.68 -1.37
BXD32/TyJ m 11.2 8.24   5 3.69 0.738 5.63, 25.6 -0.89
BXD33/TyJ m 26.3 14.0   3 8.1 0.533 15.5, 42.2 0.52
BXD34/TyJ m 18.5 13.0   8 4.6 0.704 5.63, 45.5 -0.21
BXD36/TyJ m 30.5 22.9   8 8.09 0.75 5.67, 69.2 0.91
BXD38/TyJ m 24.2 7.75   8 2.74 0.321 14.1, 38.4 0.33
BXD39/TyJ m 39.1 19.4   9 6.47 0.497 4.97, 66.1 1.72
BXD40/TyJ m 15.1 13.6   8 4.8 0.902 1.07, 35.7 -0.52
BXD42/TyJ m 11.7 6.08   9 2.03 0.52 5.27, 22.2 -0.84
BXD5/TyJ m 18.7 16.7   7 6.29 0.891 2.48, 43.2 -0.19
BXD6/TyJ m 25.5 15.4   7 5.81 0.602 6.15, 47.4 0.45
BXD8/TyJ m 26.7 14.2   8 5.02 0.532 9.94, 52.8 0.56
BXD9/TyJ m 28.3 13.2   8 4.65 0.465 7.86, 45.1 0.71
BXH10/TyJ m 22.3 14.6   10 4.62 0.654 8.86, 52.0 0.15
BXH14/TyJ m 36.7 14.2   9 4.73 0.387 21.4, 64.5 1.49
BXH19/TyJ m 33.3 15.7   14 4.18 0.469 10.8, 67.8 1.18
BXH20/KccJ m 4.36 2.33   6 0.949 0.533 1.43, 7.56 -1.53
BXH22/KccJ m 6.06 5.26   9 1.75 0.867 0.23, 17.9 -1.37
BXH2/TyJ m 30.0 14.0   15 3.62 0.467 11.3, 66.3 0.87
BXH4/TyJ m 10.7 7.8   7 2.95 0.731 3.87, 27.7 -0.94
BXH6/TyJ m 19.7 18.0   8 6.35 0.911 1.41, 49.2 -0.1
BXH7/TyJ m 13.1 0.453   3 0.262 0.0347 12.5, 13.3 -0.71
BXH8/TyJ m 23.8 13.2   6 5.38 0.552 12.6, 48.5 0.29
BXH9/TyJ m 8.55 7.88   5 3.53 0.921 0.74, 18.1 -1.14
C3H/HeJ m 26.4 10.4   8 3.67 0.393 18.2, 49.8 0.53
C57BL/6J m 22.3 6.76   12 1.95 0.303 10.2, 33.3 0.15
C57L/J m 11.6 14.7   8 5.19 1.26 1.73, 45.9 -0.85
C58/J m 34.2 15.5   8 5.47 0.452 12.5, 62.4 1.26
CAST/EiJ m 45.6 22.7   3 13.1 0.498 27.0, 70.9 2.33
CBA/J m 25.7 15.6   11 4.7 0.606 11.2, 59.2 0.47
CE/J m 33.4 25.1   4 12.6 0.753 0.52, 61.3 1.19
DBA/2J m 33.8 12.0   12 3.46 0.355 15.7, 59.8 1.22
FVB/NJ m 9.09 8.82   12 2.55 0.97 1.71, 28.4 -1.09
KK/HlJ m 14.7 16.0   7 6.04 1.09 1.89, 48.5 -0.56
LG/J m 6.8 5.74   3 3.32 0.845 1.82, 13.1 -1.3
LP/J m 25.8 16.9   11 5.1 0.655 2.56, 55.8 0.47
MA/MyJ m 7.62 5.83   4 2.92 0.765 3.67, 16.2 -1.22
NOD/ShiLtJ m 5.02 5.93   8 2.1 1.18 0.19, 14.5 -1.47
NON/ShiLtJ m 7.57 4.99   7 1.88 0.658 0.59, 16.6 -1.23
NZB/BlNJ m 36.0 21.1   7 7.98 0.586 10.1, 74.7 1.43
NZW/LacJ m 11.7 14.7   4 7.34 1.26 2.82, 33.6 -0.84
PL/J m 4.42 1.44   4 0.72 0.326 2.41, 5.67 -1.52
SEA/GnJ m 21.2 9.94   7 3.76 0.469 2.63, 28.9 0.05
SM/J m 29.0 18.0   16 4.5 0.621 8.97, 66.3 0.77
SWR/J m 5.23 4.94   11 1.49 0.944 1.33, 13.2 -1.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 6.915 7.4001 21.4487 0.0
A/J m 11.9 6.6189 24.8993 0.0
AKR/J m 6.6062 5.2327 16.8831 0.0
AXB10/PgnJ m 29.6 8.545 46.3821 12.8179
AXB12/PgnJ m 8.3275 5.2327 18.6044 0.0
AXB13/PgnJ m 3.8875 5.2327 14.1644 0.0
AXB15/PgnJ m 40.8829 5.594 51.8693 29.8964
AXB19a/PgnJ m 15.5625 7.4001 30.0962 1.0288
AXB19/PgnJ m 39.7287 3.8214 47.2338 32.2235
AXB1/PgnJ m 36.2738 5.2327 46.5506 25.9969
AXB23/PgnJ m 20.95 7.4001 35.4837 6.4163
AXB24/PgnJ m 33.7117 6.0422 45.5784 21.845
AXB2/PgnJ m 5.41 5.2327 15.6869 0.0
AXB4/PgnJ m 35.1675 7.4001 49.7012 20.6338
AXB5/PgnJ m 33.6625 5.2327 43.9394 23.3856
AXB6/PgnJ m 16.0667 4.9334 25.7558 6.3775
AXB8/PgnJ m 34.4029 5.594 45.3893 23.4164
B6cC3-1/KccJ m 10.69 5.594 21.6764 0.0
BALB/cJ m 18.3225 4.2725 26.7135 9.9315
BTBR T+ Itpr3tf/J m 17.6713 5.2327 27.9481 7.3944
BUB/BnJ m 17.8067 8.545 34.5887 1.0246
BXA12/PgnJ m 21.0714 5.594 32.0579 10.085
BXA13/PgnJ m 7.771 4.6803 16.9629 0.0
BXA14/PgnJ m 12.219 4.6803 21.4109 3.0271
BXA16/PgnJ m 10.2243 5.594 21.2107 0.0
BXA1/PgnJ m 14.1933 8.545 30.9754 0.0
BXA24/PgnJ m 30.87 6.0422 42.7367 19.0033
BXA25/PgnJ m 29.8488 5.2327 40.1256 19.5719
BXA26/PgnJ m 4.2125 5.2327 14.4894 0.0
BXA2/PgnJ m 23.8238 5.2327 34.1006 13.5469
BXA4/PgnJ m 17.0987 5.2327 27.3756 6.8219
BXA7/PgnJ m 23.03 5.2327 33.3069 12.7531
BXA8/PgnJ m 12.4975 5.2327 22.7744 2.2206
BXD11/TyJ m 29.034 6.6189 42.0333 16.0347
BXD12/TyJ m 15.98 5.2327 26.2569 5.7031
BXD13/TyJ m 21.255 7.4001 35.7887 6.7213
BXD14/TyJ m 26.1987 5.2327 36.4756 15.9219
BXD15/TyJ m 34.89 6.0422 46.7567 23.0233
BXD16/TyJ m 19.7717 6.0422 31.6384 7.905
BXD18/TyJ m 16.7029 5.594 27.6893 5.7164
BXD19/TyJ m 23.8743 5.594 34.8607 12.8879
BXD1/TyJ m 20.4529 5.594 31.4393 9.4664
BXD20/TyJ m 14.4975 5.2327 24.7744 4.2206
BXD21/TyJ m 30.8283 6.0422 42.695 18.9616
BXD24/TyJ m 33.645 7.4001 48.1787 19.1113
BXD27/TyJ m 18.7025 5.2327 28.9794 8.4256
BXD28/TyJ m 41.7 7.4001 56.2337 27.1663
BXD29-Tlr4lps-2J/J m 21.33 5.594 32.3164 10.3436
BXD2/TyJ m 20.61 7.4001 35.1437 6.0763
BXD31/TyJ m 6.045 7.4001 20.5787 0.0
BXD32/TyJ m 11.174 6.6189 24.1733 0.0
BXD33/TyJ m 26.32 8.545 43.1021 9.5379
BXD34/TyJ m 18.4862 5.2327 28.7631 8.2094
BXD36/TyJ m 30.5238 5.2327 40.8006 20.2469
BXD38/TyJ m 24.1512 5.2327 34.4281 13.8744
BXD39/TyJ m 39.06 4.9334 48.7491 29.3709
BXD40/TyJ m 15.0625 5.2327 25.3394 4.7856
BXD42/TyJ m 11.6789 4.9334 21.368 1.9898
BXD5/TyJ m 18.6857 5.594 29.6721 7.6993
BXD6/TyJ m 25.5029 5.594 36.4893 14.5164
BXD8/TyJ m 26.6787 5.2327 36.9556 16.4019
BXD9/TyJ m 28.2875 5.2327 38.5644 18.0106
BXH10/TyJ m 22.303 4.6803 31.4949 13.1111
BXH14/TyJ m 36.7333 4.9334 46.4225 27.0442
BXH19/TyJ m 33.3479 3.9555 41.1164 25.5793
BXH20/KccJ m 4.36 6.0422 16.2267 0.0
BXH22/KccJ m 6.0633 4.9334 15.7525 0.0
BXH2/TyJ m 30.0313 3.8214 37.5365 22.5262
BXH4/TyJ m 10.66 5.594 21.6464 0.0
BXH6/TyJ m 19.72 5.2327 29.9969 9.4431
BXH7/TyJ m 13.0633 8.545 29.8454 0.0
BXH8/TyJ m 23.8483 6.0422 35.715 11.9816
BXH9/TyJ m 8.554 6.6189 21.5533 0.0
C3H/HeJ m 26.3887 5.2327 36.6656 16.1119
C57BL/6J m 22.2717 4.2725 30.6627 13.8806
C57L/J m 11.6225 5.2327 21.8994 1.3456
C58/J m 34.1975 5.2327 44.4744 23.9206
CAST/EiJ m 45.5767 8.545 62.3587 28.7946
CBA/J m 25.7155 4.4625 34.4796 16.9513
CE/J m 33.355 7.4001 47.8887 18.8213
DBA/2J m 33.7825 4.2725 42.1735 25.3915
FVB/NJ m 9.0875 4.2725 17.4785 0.6965
KK/HlJ m 14.6971 5.594 25.6836 3.7107
LG/J m 6.7967 8.545 23.5787 0.0
LP/J m 25.7864 4.4625 34.5505 17.0222
MA/MyJ m 7.6175 7.4001 22.1512 0.0
NOD/ShiLtJ m 5.0213 5.2327 15.2981 0.0
NON/ShiLtJ m 7.5729 5.594 18.5593 0.0
NZB/BlNJ m 36.0114 5.594 46.9979 25.025
NZW/LacJ m 11.6875 7.4001 26.2212 0.0
PL/J m 4.425 7.4001 18.9587 0.0
SEA/GnJ m 21.1943 5.594 32.1807 10.2079
SM/J m 28.9687 3.7001 36.2356 21.7019
SWR/J m 5.2318 4.4625 13.996 0.0




  GWAS USING LINEAR MIXED MODELS