Project measure / variable:   HMDPpheno4   cue_thig

ID, description, units MPD:46852   cue_thig   cued fear thigmotaxis, percent time spent near chamber walls, day 3   [%]  cue  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - cued fear thigmotaxis, percent time spent near chamber walls, day 3 cue



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means67.3   %
Median of the strain means66.8   %
SD of the strain means± 7.78
Coefficient of variation (CV)0.116
Min–max range of strain means46.6   –   86.8   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 40489.7052 435.3732 2.3451 < 0.0001
Residuals 593 110091.7125 185.6521


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 50.8 21.4   4 10.7 0.42 27.9, 78.8 -2.12
A/J m 71.3 8.24   5 3.69 0.116 61.1, 81.7 0.52
AKR/J m 62.6 4.3   8 1.52 0.0687 55.5, 66.6 -0.6
AXB10/PgnJ m 73.2 8.7   3 5.02 0.119 64.1, 81.4 0.76
AXB12/PgnJ m 59.8 10.6   8 3.76 0.178 34.9, 67.1 -0.96
AXB13/PgnJ m 71.4 6.96   8 2.46 0.0975 59.2, 80.0 0.53
AXB15/PgnJ m 59.5 25.9   7 9.79 0.435 13.8, 91.7 -1.0
AXB19a/PgnJ m 83.7 6.75   4 3.37 0.0806 74.3, 88.6 2.11
AXB19/PgnJ m 74.2 16.3   15 4.22 0.22 32.6, 91.7 0.89
AXB1/PgnJ m 72.5 8.81   8 3.11 0.122 60.1, 86.1 0.67
AXB23/PgnJ m 62.3 15.0   4 7.51 0.241 41.9, 75.0 -0.64
AXB24/PgnJ m 73.4 14.2   6 5.79 0.193 46.2, 83.6 0.79
AXB2/PgnJ m 72.5 10.8   8 3.82 0.149 60.4, 88.2 0.67
AXB4/PgnJ m 78.0 14.8   4 7.38 0.189 58.0, 91.7 1.38
AXB5/PgnJ m 66.7 21.0   8 7.42 0.315 26.3, 91.5 -0.08
AXB6/PgnJ m 67.1 10.0   9 3.34 0.149 47.3, 83.0 -0.02
AXB8/PgnJ m 73.4 8.05   7 3.04 0.11 58.2, 83.6 0.79
B6cC3-1/KccJ m 79.4 10.3   7 3.9 0.13 66.8, 91.3 1.56
BALB/cJ m 64.2 10.8   12 3.13 0.169 53.5, 91.7 -0.4
BTBR T+ Itpr3tf/J m 62.8 5.4   8 1.91 0.086 56.1, 72.6 -0.58
BUB/BnJ m 57.9 19.2   3 11.1 0.332 44.7, 80.0 -1.21
BXA12/PgnJ m 65.4 8.4   7 3.17 0.128 54.0, 81.2 -0.24
BXA13/PgnJ m 66.2 12.3   10 3.89 0.186 48.8, 88.3 -0.14
BXA14/PgnJ m 67.4 14.1   10 4.47 0.21 48.3, 88.3 0.01
BXA16/PgnJ m 65.7 10.3   7 3.9 0.157 52.7, 81.2 -0.2
BXA1/PgnJ m 66.1 7.51   3 4.34 0.114 59.2, 74.1 -0.15
BXA24/PgnJ m 63.2 36.9   6 15.1 0.583 13.3, 89.1 -0.53
BXA25/PgnJ m 81.6 8.91   8 3.15 0.109 71.5, 91.7 1.84
BXA26/PgnJ m 66.7 10.9   8 3.86 0.164 46.8, 79.8 -0.08
BXA2/PgnJ m 84.0 3.55   8 1.26 0.0423 79.7, 88.7 2.15
BXA4/PgnJ m 82.5 7.23   8 2.56 0.0877 72.9, 91.6 1.96
BXA7/PgnJ m 73.9 9.84   8 3.48 0.133 53.7, 85.0 0.85
BXA8/PgnJ m 65.8 16.1   8 5.68 0.244 44.0, 83.4 -0.19
BXD11/TyJ m 75.3 14.8   5 6.63 0.197 50.3, 90.2 1.03
BXD12/TyJ m 73.7 12.8   8 4.51 0.173 55.3, 89.7 0.82
BXD13/TyJ m 56.2 20.1   4 10.1 0.358 31.3, 80.4 -1.43
BXD14/TyJ m 73.8 10.6   8 3.75 0.144 55.6, 84.6 0.84
BXD15/TyJ m 59.9 16.8   6 6.87 0.281 28.2, 75.1 -0.95
BXD16/TyJ m 71.9 7.27   6 2.97 0.101 61.4, 79.9 0.59
BXD18/TyJ m 69.0 13.2   7 4.97 0.191 47.7, 91.2 0.22
BXD19/TyJ m 68.6 10.2   7 3.86 0.149 54.8, 84.1 0.17
BXD1/TyJ m 54.4 34.1   7 12.9 0.627 7.21, 88.3 -1.66
BXD20/TyJ m 60.8 10.6   8 3.74 0.174 42.9, 73.5 -0.83
BXD21/TyJ m 73.0 5.64   6 2.3 0.0773 64.1, 81.4 0.73
BXD24/TyJ m 73.6 9.6   4 4.8 0.13 63.5, 84.1 0.81
BXD27/TyJ m 70.2 7.76   8 2.74 0.111 61.8, 81.6 0.37
BXD28/TyJ m 86.8 4.28   4 2.14 0.0493 81.2, 91.5 2.51
BXD29-Tlr4lps-2J/J m 68.6 10.9   7 4.1 0.158 46.7, 78.3 0.17
BXD2/TyJ m 66.8 4.39   4 2.19 0.0657 61.7, 72.3 -0.06
BXD31/TyJ m 72.9 8.59   4 4.3 0.118 61.8, 81.6 0.72
BXD32/TyJ m 63.3 10.5   5 4.71 0.166 45.6, 71.7 -0.51
BXD33/TyJ m 74.4 9.92   3 5.73 0.133 67.1, 85.7 0.91
BXD34/TyJ m 66.4 15.1   8 5.34 0.227 45.6, 90.3 -0.11
BXD36/TyJ m 59.7 19.8   8 6.99 0.331 12.8, 73.0 -0.98
BXD38/TyJ m 66.2 12.4   8 4.38 0.187 47.2, 83.6 -0.14
BXD39/TyJ m 51.6 32.0   9 10.7 0.62 17.7, 91.5 -2.02
BXD40/TyJ m 58.7 29.5   8 10.4 0.502 8.85, 87.8 -1.1
BXD42/TyJ m 59.5 17.9   9 5.97 0.301 13.1, 71.7 -1.0
BXD5/TyJ m 62.0 13.1   7 4.97 0.212 46.6, 82.0 -0.68
BXD6/TyJ m 68.0 5.68   7 2.15 0.0836 61.2, 75.8 0.09
BXD8/TyJ m 70.6 9.76   8 3.45 0.138 57.5, 87.1 0.43
BXD9/TyJ m 72.0 12.1   8 4.27 0.168 50.7, 86.5 0.61
BXH10/TyJ m 55.0 15.7   10 4.96 0.285 21.5, 69.5 -1.58
BXH14/TyJ m 68.9 9.34   9 3.11 0.136 56.2, 85.4 0.21
BXH19/TyJ m 74.1 9.3   14 2.49 0.126 51.9, 84.5 0.88
BXH20/KccJ m 59.8 8.23   6 3.36 0.138 53.8, 75.8 -0.96
BXH22/KccJ m 75.2 6.42   9 2.14 0.0853 65.2, 81.4 1.02
BXH2/TyJ m 46.6 26.1   15 6.74 0.56 0.35, 85.5 -2.66
BXH4/TyJ m 69.5 10.4   7 3.92 0.149 55.5, 82.6 0.28
BXH6/TyJ m 66.4 9.14   8 3.23 0.138 49.4, 80.6 -0.11
BXH7/TyJ m 77.1 0.236   3 0.137 0.00307 76.9, 77.3 1.26
BXH8/TyJ m 59.9 8.43   6 3.44 0.141 46.8, 69.5 -0.95
BXH9/TyJ m 64.5 7.66   5 3.43 0.119 57.8, 76.2 -0.36
C3H/HeJ m 74.5 7.23   8 2.56 0.097 63.3, 85.8 0.93
C57BL/6J m 68.8 6.51   12 1.88 0.0947 57.9, 81.6 0.19
C57L/J m 49.2 9.02   8 3.19 0.183 38.7, 67.4 -2.33
C58/J m 62.0 5.23   8 1.85 0.0844 54.6, 71.3 -0.68
CAST/EiJ m 72.8 16.5   3 9.5 0.226 60.7, 91.5 0.71
CBA/J m 66.5 8.9   11 2.68 0.134 55.4, 83.5 -0.1
CE/J m 66.5 11.6   4 5.8 0.174 52.5, 80.8 -0.1
DBA/2J m 69.3 6.29   12 1.82 0.0908 62.1, 81.2 0.26
FVB/NJ m 62.4 8.3   12 2.39 0.133 45.8, 78.4 -0.63
KK/HlJ m 63.3 11.2   7 4.23 0.177 52.1, 79.9 -0.51
LG/J m 65.6 14.1   3 8.13 0.215 51.6, 79.8 -0.22
LP/J m 69.5 14.5   11 4.38 0.209 46.3, 88.3 0.28
MA/MyJ m 54.2 25.5   4 12.7 0.47 21.7, 79.3 -1.68
NOD/ShiLtJ m 60.5 17.1   8 6.04 0.282 34.1, 89.4 -0.87
NON/ShiLtJ m 64.4 6.4   7 2.42 0.0993 56.7, 71.7 -0.37
NZB/BlNJ m 74.2 6.02   7 2.28 0.0812 62.8, 79.8 0.89
NZW/LacJ m 62.8 8.25   4 4.12 0.131 51.6, 71.5 -0.58
PL/J m 58.8 4.95   4 2.47 0.0841 53.5, 65.2 -1.09
SEA/GnJ m 76.3 5.18   7 1.96 0.0679 70.4, 84.5 1.16
SM/J m 70.9 7.96   16 1.99 0.112 55.3, 81.7 0.46
SWR/J m 62.3 5.69   11 1.71 0.0913 53.1, 73.0 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 50.845 6.8127 64.225 37.465
A/J m 71.278 6.0935 83.2454 59.3106
AKR/J m 62.63 4.8173 72.0911 53.1689
AXB10/PgnJ m 73.22 7.8666 88.6699 57.7701
AXB12/PgnJ m 59.7713 4.8173 69.2323 50.3102
AXB13/PgnJ m 71.3875 4.8173 80.8486 61.9264
AXB15/PgnJ m 59.5443 5.1499 69.6586 49.43
AXB19a/PgnJ m 83.71 6.8127 97.09 70.33
AXB19/PgnJ m 74.2207 3.5181 81.1301 67.3113
AXB1/PgnJ m 72.4663 4.8173 81.9273 63.0052
AXB23/PgnJ m 62.335 6.8127 75.715 48.955
AXB24/PgnJ m 73.3917 5.5626 84.3164 62.467
AXB2/PgnJ m 72.4638 4.8173 81.9248 63.0027
AXB4/PgnJ m 77.98 6.8127 91.36 64.6
AXB5/PgnJ m 66.7237 4.8173 76.1848 57.2627
AXB6/PgnJ m 67.1122 4.5418 76.0322 58.1922
AXB8/PgnJ m 73.3843 5.1499 83.4986 63.27
B6cC3-1/KccJ m 79.4114 5.1499 89.5257 69.2971
BALB/cJ m 64.2117 3.9333 71.9366 56.4867
BTBR T+ Itpr3tf/J m 62.835 4.8173 72.2961 53.3739
BUB/BnJ m 57.91 7.8666 73.3599 42.4601
BXA12/PgnJ m 65.3857 5.1499 75.5 55.2714
BXA13/PgnJ m 66.157 4.3087 74.6192 57.6948
BXA14/PgnJ m 67.374 4.3087 75.8362 58.9118
BXA16/PgnJ m 65.7143 5.1499 75.8286 55.6
BXA1/PgnJ m 66.07 7.8666 81.5199 50.6201
BXA24/PgnJ m 63.19 5.5626 74.1147 52.2653
BXA25/PgnJ m 81.6263 4.8173 91.0873 72.1652
BXA26/PgnJ m 66.6587 4.8173 76.1198 57.1977
BXA2/PgnJ m 83.9588 4.8173 93.4198 74.4977
BXA4/PgnJ m 82.465 4.8173 91.9261 73.0039
BXA7/PgnJ m 73.86 4.8173 83.3211 64.3989
BXA8/PgnJ m 65.8475 4.8173 75.3086 56.3864
BXD11/TyJ m 75.308 6.0935 87.2754 63.3406
BXD12/TyJ m 73.6737 4.8173 83.1348 64.2127
BXD13/TyJ m 56.2275 6.8127 69.6075 42.8475
BXD14/TyJ m 73.7525 4.8173 83.2136 64.2914
BXD15/TyJ m 59.9467 5.5626 70.8714 49.022
BXD16/TyJ m 71.8783 5.5626 82.803 60.9536
BXD18/TyJ m 68.9643 5.1499 79.0786 58.85
BXD19/TyJ m 68.5657 5.1499 78.68 58.4514
BXD1/TyJ m 54.3843 5.1499 64.4986 44.27
BXD20/TyJ m 60.76 4.8173 70.2211 51.2989
BXD21/TyJ m 73.0017 5.5626 83.9264 62.077
BXD24/TyJ m 73.6425 6.8127 87.0225 60.2625
BXD27/TyJ m 70.1525 4.8173 79.6136 60.6914
BXD28/TyJ m 86.8125 6.8127 100.1925 73.4325
BXD29-Tlr4lps-2J/J m 68.5743 5.1499 78.6886 58.46
BXD2/TyJ m 66.835 6.8127 80.215 53.455
BXD31/TyJ m 72.89 6.8127 86.27 59.51
BXD32/TyJ m 63.328 6.0935 75.2954 51.3606
BXD33/TyJ m 74.35 7.8666 89.7999 58.9001
BXD34/TyJ m 66.4125 4.8173 75.8736 56.9514
BXD36/TyJ m 59.675 4.8173 69.1361 50.2139
BXD38/TyJ m 66.1775 4.8173 75.6386 56.7164
BXD39/TyJ m 51.6167 4.5418 60.5367 42.6967
BXD40/TyJ m 58.7363 4.8173 68.1973 49.2752
BXD42/TyJ m 59.5244 4.5418 68.4444 50.6045
BXD5/TyJ m 61.9986 5.1499 72.1129 51.8843
BXD6/TyJ m 68.0143 5.1499 78.1286 57.9
BXD8/TyJ m 70.6 4.8173 80.0611 61.1389
BXD9/TyJ m 71.9725 4.8173 81.4336 62.5114
BXH10/TyJ m 55.011 4.3087 63.4732 46.5488
BXH14/TyJ m 68.91 4.5418 77.83 59.99
BXH19/TyJ m 74.0921 3.6415 81.244 66.9402
BXH20/KccJ m 59.775 5.5626 70.6997 48.8503
BXH22/KccJ m 75.2422 4.5418 84.1622 66.3222
BXH2/TyJ m 46.596 3.5181 53.5054 39.6866
BXH4/TyJ m 69.5057 5.1499 79.62 59.3914
BXH6/TyJ m 66.3875 4.8173 75.8486 56.9264
BXH7/TyJ m 77.12 7.8666 92.5699 61.6701
BXH8/TyJ m 59.905 5.5626 70.8297 48.9803
BXH9/TyJ m 64.55 6.0935 76.5174 52.5826
C3H/HeJ m 74.5113 4.8173 83.9723 65.0502
C57BL/6J m 68.775 3.9333 76.4999 61.0501
C57L/J m 49.2213 4.8173 58.6823 39.7602
C58/J m 61.955 4.8173 71.4161 52.4939
CAST/EiJ m 72.7933 7.8666 88.2432 57.3435
CBA/J m 66.5373 4.1082 74.6057 58.4688
CE/J m 66.52 6.8127 79.9 53.14
DBA/2J m 69.305 3.9333 77.0299 61.5801
FVB/NJ m 62.405 3.9333 70.1299 54.6801
KK/HlJ m 63.3157 5.1499 73.43 53.2014
LG/J m 65.5567 7.8666 81.0065 50.1068
LP/J m 69.5391 4.1082 77.6075 61.4707
MA/MyJ m 54.2125 6.8127 67.5925 40.8325
NOD/ShiLtJ m 60.475 4.8173 69.9361 51.0139
NON/ShiLtJ m 64.4114 5.1499 74.5257 54.2971
NZB/BlNJ m 74.1629 5.1499 84.2772 64.0485
NZW/LacJ m 62.76 6.8127 76.14 49.38
PL/J m 58.8225 6.8127 72.2025 45.4425
SEA/GnJ m 76.2657 5.1499 86.38 66.1514
SM/J m 70.9344 3.4064 77.6244 64.2444
SWR/J m 62.2836 4.1082 70.3521 54.2152




  GWAS USING LINEAR MIXED MODELS