Phenotype measure:   HMDPpheno4   precue_thig

ID, description, units MPD:46851   precue_thig   cued fear thigmotaxis, percent time spent near chamber walls, day 3   [%]  pre-cue
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno4 - cued fear thigmotaxis, percent time spent near chamber walls, day 3 pre-cue



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means70.5   %
Median of the strain means70.8   %
SD of the strain means± 6.85
Coefficient of variation (CV)0.0971
Min–max range of strain means50.0   –   84.5   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 32598.7329 350.524 2.1329 < 0.0001
Residuals 593 97455.5307 164.3432


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 74.7 6.74   4 3.37 0.0903 65.8, 81.9 0.61
A/J m 71.5 12.0   5 5.35 0.167 58.1, 85.9 0.14
AKR/J m 64.0 4.95   8 1.75 0.0773 58.2, 73.9 -0.95
AXB10/PgnJ m 77.5 7.74   3 4.47 0.0999 68.7, 83.2 1.02
AXB12/PgnJ m 75.0 9.5   8 3.36 0.127 62.7, 87.8 0.65
AXB13/PgnJ m 67.8 6.75   8 2.39 0.0996 55.4, 76.8 -0.4
AXB15/PgnJ m 64.7 20.5   7 7.76 0.317 35.7, 92.0 -0.85
AXB19a/PgnJ m 62.9 3.11   4 1.55 0.0494 59.1, 66.3 -1.11
AXB19/PgnJ m 72.7 23.2   15 5.99 0.319 1.89, 98.3 0.32
AXB1/PgnJ m 74.9 13.8   8 4.89 0.185 45.5, 89.2 0.64
AXB23/PgnJ m 68.5 13.0   4 6.52 0.19 50.1, 80.5 -0.3
AXB24/PgnJ m 82.5 6.12   6 2.5 0.0742 72.8, 89.9 1.75
AXB2/PgnJ m 64.7 7.99   8 2.83 0.124 47.2, 71.2 -0.85
AXB4/PgnJ m 84.5 5.23   4 2.62 0.0619 76.8, 88.0 2.04
AXB5/PgnJ m 64.9 25.7   8 9.08 0.396 8.46, 91.0 -0.82
AXB6/PgnJ m 70.6 8.96   9 2.99 0.127 50.4, 82.1 0.01
AXB8/PgnJ m 72.0 8.49   7 3.21 0.118 57.5, 85.5 0.22
B6cC3-1/KccJ m 70.6 9.83   7 3.72 0.139 54.1, 87.2 0.01
BALB/cJ m 71.2 9.81   12 2.83 0.138 58.5, 98.2 0.1
BTBR T+ Itpr3tf/J m 71.6 9.49   8 3.36 0.133 56.2, 86.5 0.16
BUB/BnJ m 61.9 22.8   3 13.1 0.368 47.0, 88.1 -1.26
BXA12/PgnJ m 72.8 8.46   7 3.2 0.116 60.8, 88.6 0.33
BXA13/PgnJ m 71.4 7.51   10 2.37 0.105 57.9, 84.9 0.13
BXA14/PgnJ m 67.6 12.5   10 3.97 0.186 49.4, 88.8 -0.43
BXA16/PgnJ m 68.5 12.1   7 4.58 0.177 49.1, 81.0 -0.3
BXA1/PgnJ m 61.9 12.4   3 7.16 0.2 49.1, 73.9 -1.26
BXA24/PgnJ m 80.1 9.28   6 3.79 0.116 64.1, 91.8 1.4
BXA25/PgnJ m 78.3 9.52   8 3.37 0.122 66.0, 89.2 1.14
BXA26/PgnJ m 71.4 10.4   8 3.66 0.145 53.5, 86.6 0.13
BXA2/PgnJ m 80.9 7.24   8 2.56 0.0894 69.5, 90.3 1.52
BXA4/PgnJ m 77.1 11.6   8 4.11 0.151 64.3, 99.0 0.96
BXA7/PgnJ m 80.5 6.4   8 2.26 0.0795 70.5, 91.0 1.46
BXA8/PgnJ m 66.4 15.3   8 5.4 0.23 37.4, 80.9 -0.6
BXD11/TyJ m 68.5 7.24   5 3.24 0.106 56.0, 74.5 -0.3
BXD12/TyJ m 70.9 7.0   8 2.48 0.0987 59.7, 79.8 0.06
BXD13/TyJ m 79.5 15.3   4 7.64 0.192 60.8, 95.1 1.31
BXD14/TyJ m 74.3 10.1   8 3.58 0.136 58.3, 86.7 0.55
BXD15/TyJ m 68.7 15.9   6 6.49 0.231 40.2, 87.0 -0.27
BXD16/TyJ m 76.2 5.71   6 2.33 0.0749 70.5, 82.9 0.83
BXD18/TyJ m 65.7 11.7   7 4.41 0.177 45.9, 78.2 -0.7
BXD19/TyJ m 70.7 7.45   7 2.82 0.105 59.0, 78.9 0.03
BXD1/TyJ m 50.0 26.0   7 9.81 0.519 14.9, 83.3 -3.0
BXD20/TyJ m 67.4 9.7   8 3.43 0.144 51.8, 80.6 -0.46
BXD21/TyJ m 77.4 5.85   6 2.39 0.0756 68.7, 83.2 1.0
BXD24/TyJ m 73.8 5.26   4 2.63 0.0713 66.8, 78.9 0.48
BXD27/TyJ m 70.6 8.11   8 2.87 0.115 59.4, 82.5 0.01
BXD28/TyJ m 84.0 5.28   4 2.64 0.0628 80.1, 91.7 1.97
BXD29-Tlr4lps-2J/J m 66.4 9.29   7 3.51 0.14 50.3, 79.0 -0.6
BXD2/TyJ m 78.0 8.82   4 4.41 0.113 65.7, 85.1 1.09
BXD31/TyJ m 73.2 9.94   4 4.97 0.136 62.0, 82.5 0.39
BXD32/TyJ m 70.7 11.9   5 5.33 0.169 52.8, 83.7 0.03
BXD33/TyJ m 76.0 2.17   3 1.26 0.0286 74.2, 78.4 0.8
BXD34/TyJ m 69.4 16.9   8 5.98 0.244 38.7, 90.0 -0.16
BXD36/TyJ m 77.7 10.3   8 3.62 0.132 64.4, 91.3 1.05
BXD38/TyJ m 65.5 8.37   8 2.96 0.128 55.8, 80.8 -0.73
BXD39/TyJ m 72.8 13.9   9 4.64 0.191 45.0, 90.5 0.33
BXD40/TyJ m 54.4 27.2   8 9.62 0.5 7.04, 83.4 -2.35
BXD42/TyJ m 66.4 4.67   9 1.56 0.0703 54.6, 70.2 -0.6
BXD5/TyJ m 70.0 9.37   7 3.54 0.134 56.7, 81.2 -0.08
BXD6/TyJ m 64.8 28.7   7 10.9 0.443 1.89, 85.5 -0.84
BXD8/TyJ m 72.5 10.2   8 3.61 0.141 61.1, 86.7 0.29
BXD9/TyJ m 69.2 19.2   8 6.79 0.277 28.8, 85.9 -0.19
BXH10/TyJ m 64.7 16.5   10 5.2 0.254 22.0, 81.6 -0.85
BXH14/TyJ m 75.3 12.3   9 4.09 0.163 56.8, 90.8 0.7
BXH19/TyJ m 76.2 8.17   14 2.18 0.107 55.2, 88.1 0.83
BXH20/KccJ m 57.2 14.1   6 5.77 0.247 37.5, 79.4 -1.95
BXH22/KccJ m 71.6 7.3   9 2.43 0.102 55.6, 79.2 0.16
BXH2/TyJ m 51.6 26.5   15 6.85 0.514 -2.76
BXH4/TyJ m 70.3 11.8   7 4.45 0.167 51.7, 83.0 -0.03
BXH6/TyJ m 74.3 12.5   8 4.41 0.168 48.1, 89.3 0.55
BXH7/TyJ m 72.6 1.71   3 0.987 0.0236 70.6, 73.6 0.3
BXH8/TyJ m 55.9 12.4   6 5.07 0.222 37.9, 72.4 -2.14
BXH9/TyJ m 67.4 3.36   5 1.5 0.0499 63.3, 71.1 -0.46
C3H/HeJ m 75.1 7.81   8 2.76 0.104 62.3, 89.8 0.67
C57BL/6J m 75.5 5.76   12 1.66 0.0762 65.1, 84.3 0.73
C57L/J m 65.3 10.2   8 3.6 0.156 48.3, 82.7 -0.76
C58/J m 77.2 7.19   8 2.54 0.0931 69.3, 86.4 0.98
CAST/EiJ m 79.4 20.1   3 11.6 0.253 58.3, 98.3 1.3
CBA/J m 74.1 10.3   11 3.09 0.138 59.4, 93.7 0.52
CE/J m 71.7 17.1   4 8.53 0.238 47.6, 84.5 0.17
DBA/2J m 81.0 6.59   12 1.9 0.0814 63.7, 90.1 1.53
FVB/NJ m 65.7 7.09   12 2.05 0.108 57.2, 80.9 -0.7
KK/HlJ m 67.5 9.76   7 3.69 0.145 51.7, 79.6 -0.44
LG/J m 69.3 8.6   3 4.96 0.124 63.6, 79.2 -0.18
LP/J m 70.3 11.1   11 3.36 0.158 60.0, 92.6 -0.03
MA/MyJ m 61.9 3.41   4 1.71 0.0552 58.4, 66.5 -1.26
NOD/ShiLtJ m 62.0 14.3   8 5.05 0.23 37.3, 80.9 -1.24
NON/ShiLtJ m 67.7 7.35   7 2.78 0.108 55.8, 76.8 -0.41
NZB/BlNJ m 55.3 26.6   7 10.0 0.481 -2.22
NZW/LacJ m 73.0 10.2   4 5.08 0.139 64.7, 87.8 0.36
PL/J m 65.4 4.41   4 2.21 0.0674 60.4, 70.7 -0.75
SEA/GnJ m 74.2 9.82   7 3.71 0.132 58.1, 83.6 0.54
SM/J m 81.1 9.09   16 2.27 0.112 67.2, 97.4 1.55
SWR/J m 68.9 5.82   11 1.76 0.0845 60.2, 79.7 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 74.6525 6.4098 87.2412 62.0638
A/J m 71.548 5.7331 82.8077 60.2883
AKR/J m 64.0487 4.5324 72.9503 55.1472
AXB10/PgnJ m 77.5367 7.4014 92.0729 63.0005
AXB12/PgnJ m 74.9725 4.5324 83.8741 66.0709
AXB13/PgnJ m 67.7913 4.5324 76.6928 58.8897
AXB15/PgnJ m 64.6814 4.8454 74.1976 55.1653
AXB19a/PgnJ m 62.9225 6.4098 75.5112 50.3338
AXB19/PgnJ m 72.6547 3.31 79.1554 66.1539
AXB1/PgnJ m 74.8825 4.5324 83.7841 65.9809
AXB23/PgnJ m 68.525 6.4098 81.1137 55.9363
AXB24/PgnJ m 82.46 5.2336 92.7386 72.1814
AXB2/PgnJ m 64.6725 4.5324 73.5741 55.7709
AXB4/PgnJ m 84.5025 6.4098 97.0912 71.9138
AXB5/PgnJ m 64.9038 4.5324 73.8053 56.0022
AXB6/PgnJ m 70.6011 4.2732 78.9936 62.2086
AXB8/PgnJ m 72.0114 4.8454 81.5276 62.4953
B6cC3-1/KccJ m 70.6243 4.8454 80.1405 61.1081
BALB/cJ m 71.1625 3.7007 78.4306 63.8944
BTBR T+ Itpr3tf/J m 71.62 4.5324 80.5216 62.7184
BUB/BnJ m 61.8833 7.4014 76.4195 47.3471
BXA12/PgnJ m 72.8371 4.8454 82.3533 63.321
BXA13/PgnJ m 71.361 4.0539 79.3228 63.3992
BXA14/PgnJ m 67.631 4.0539 75.5928 59.6692
BXA16/PgnJ m 68.4914 4.8454 78.0076 58.9753
BXA1/PgnJ m 61.91 7.4014 76.4462 47.3738
BXA24/PgnJ m 80.0533 5.2336 90.332 69.7747
BXA25/PgnJ m 78.2825 4.5324 87.1841 69.3809
BXA26/PgnJ m 71.3662 4.5324 80.2678 62.4647
BXA2/PgnJ m 80.9325 4.5324 89.8341 72.0309
BXA4/PgnJ m 77.1375 4.5324 86.0391 68.2359
BXA7/PgnJ m 80.5425 4.5324 89.4441 71.6409
BXA8/PgnJ m 66.435 4.5324 75.3366 57.5334
BXD11/TyJ m 68.466 5.7331 79.7257 57.2063
BXD12/TyJ m 70.935 4.5324 79.8366 62.0334
BXD13/TyJ m 79.515 6.4098 92.1037 66.9263
BXD14/TyJ m 74.2675 4.5324 83.1691 65.3659
BXD15/TyJ m 68.7483 5.2336 79.027 58.4697
BXD16/TyJ m 76.245 5.2336 86.5236 65.9664
BXD18/TyJ m 65.7414 4.8454 75.2576 56.2253
BXD19/TyJ m 70.7 4.8454 80.2162 61.1838
BXD1/TyJ m 49.9957 4.8454 59.5119 40.4795
BXD20/TyJ m 67.4087 4.5324 76.3103 58.5072
BXD21/TyJ m 77.3883 5.2336 87.667 67.1097
BXD24/TyJ m 73.795 6.4098 86.3837 61.2063
BXD27/TyJ m 70.64 4.5324 79.5416 61.7384
BXD28/TyJ m 84.03 6.4098 96.6187 71.4413
BXD29-Tlr4lps-2J/J m 66.4114 4.8454 75.9276 56.8953
BXD2/TyJ m 78.0475 6.4098 90.6362 65.4588
BXD31/TyJ m 73.24 6.4098 85.8287 60.6513
BXD32/TyJ m 70.73 5.7331 81.9897 59.4703
BXD33/TyJ m 76.0367 7.4014 90.5729 61.5005
BXD34/TyJ m 69.3912 4.5324 78.2928 60.4897
BXD36/TyJ m 77.6812 4.5324 86.5828 68.7797
BXD38/TyJ m 65.4925 4.5324 74.3941 56.5909
BXD39/TyJ m 72.7622 4.2732 81.1547 64.3697
BXD40/TyJ m 54.4087 4.5324 63.3103 45.5072
BXD42/TyJ m 66.3789 4.2732 74.7714 57.9864
BXD5/TyJ m 70.04 4.8454 79.5562 60.5238
BXD6/TyJ m 64.8029 4.8454 74.319 55.2867
BXD8/TyJ m 72.4662 4.5324 81.3678 63.5647
BXD9/TyJ m 69.235 4.5324 78.1366 60.3334
BXH10/TyJ m 64.692 4.0539 72.6538 56.7302
BXH14/TyJ m 75.2822 4.2732 83.6747 66.8897
BXH19/TyJ m 76.205 3.4262 82.9339 69.4761
BXH20/KccJ m 57.205 5.2336 67.4836 46.9264
BXH22/KccJ m 71.55 4.2732 79.9425 63.1575
BXH2/TyJ m 51.618 3.31 58.1188 45.1172
BXH4/TyJ m 70.3314 4.8454 79.8476 60.8153
BXH6/TyJ m 74.3012 4.5324 83.2028 65.3997
BXH7/TyJ m 72.5733 7.4014 87.1095 58.0371
BXH8/TyJ m 55.945 5.2336 66.2236 45.6664
BXH9/TyJ m 67.364 5.7331 78.6237 56.1043
C3H/HeJ m 75.0925 4.5324 83.9941 66.1909
C57BL/6J m 75.525 3.7007 82.7931 68.2569
C57L/J m 65.33 4.5324 74.2316 56.4284
C58/J m 77.2262 4.5324 86.1278 68.3247
CAST/EiJ m 79.36 7.4014 93.8962 64.8238
CBA/J m 74.1264 3.8653 81.7176 66.5351
CE/J m 71.735 6.4098 84.3237 59.1463
DBA/2J m 81.0025 3.7007 88.2706 73.7344
FVB/NJ m 65.7425 3.7007 73.0106 58.4744
KK/HlJ m 67.4643 4.8454 76.9805 57.9481
LG/J m 69.2967 7.4014 83.8329 54.7605
LP/J m 70.2682 3.8653 77.8595 62.6769
MA/MyJ m 61.88 6.4098 74.4687 49.2913
NOD/ShiLtJ m 62.0012 4.5324 70.9028 53.0997
NON/ShiLtJ m 67.7186 4.8454 77.2347 58.2024
NZB/BlNJ m 55.2871 4.8454 64.8033 45.771
NZW/LacJ m 73.0175 6.4098 85.6062 60.4288
PL/J m 65.3975 6.4098 77.9862 52.8088
SEA/GnJ m 74.2 4.8454 83.7162 64.6838
SM/J m 81.1306 3.2049 87.425 74.8363
SWR/J m 68.8964 3.8653 76.4876 61.3051




  GWAS USING LINEAR MIXED MODELS