Phenotype measure:   HMDPpheno4   ctx_vel


  STRAIN COMPARISON PLOT
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HMDPpheno4 - contextual fear velocity, day 2



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means3.37   cm/s
Median of the strain means3.40   cm/s
SD of the strain means± 0.899
Coefficient of variation (CV)0.267
Min–max range of strain means1.33   –   6.13   cm/s
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 531.8577 5.7189 3.6785 < 0.0001
Residuals 593 921.916 1.5547


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4.03 1.16   4 0.579 0.287 2.89, 5.63 0.74
A/J m 2.5 1.34   5 0.598 0.535 0.57, 3.88 -0.96
AKR/J m 3.62 1.73   8 0.613 0.48 0.98, 6.07 0.28
AXB10/PgnJ m 2.75 0.216   3 0.125 0.0787 2.51, 2.93 -0.68
AXB12/PgnJ m 2.77 0.877   8 0.31 0.316 1.93, 4.66 -0.66
AXB13/PgnJ m 3.13 0.453   8 0.16 0.145 2.41, 3.65 -0.26
AXB15/PgnJ m 1.91 0.496   7 0.187 0.26 1.2, 2.75 -1.62
AXB19a/PgnJ m 2.15 1.04   4 0.521 0.485 0.89, 3.34 -1.35
AXB19/PgnJ m 2.49 0.793   15 0.205 0.318 1.53, 4.27 -0.97
AXB1/PgnJ m 2.64 0.557   8 0.197 0.211 2.01, 3.72 -0.81
AXB23/PgnJ m 2.28 0.326   4 0.163 0.143 2.02, 2.74 -1.21
AXB24/PgnJ m 2.44 0.763   6 0.312 0.313 1.6, 3.6 -1.03
AXB2/PgnJ m 3.73 1.49   8 0.528 0.401 1.36, 5.64 0.41
AXB4/PgnJ m 2.2 0.0726   4 0.0363 0.033 2.12, 2.29 -1.3
AXB5/PgnJ m 3.43 1.6   8 0.564 0.465 1.27, 6.29 0.07
AXB6/PgnJ m 3.43 1.71   9 0.571 0.499 1.96, 7.37 0.07
AXB8/PgnJ m 3.0 1.18   7 0.447 0.394 1.32, 4.39 -0.41
B6cC3-1/KccJ m 3.49 1.07   7 0.404 0.306 1.84, 5.4 0.14
BALB/cJ m 3.49 0.75   12 0.216 0.215 2.09, 4.97 0.14
BTBR T+ Itpr3tf/J m 3.17 0.711   8 0.251 0.224 2.1, 4.1 -0.22
BUB/BnJ m 4.05 1.28   3 0.741 0.317 2.65, 5.17 0.76
BXA12/PgnJ m 3.25 1.47   7 0.554 0.452 1.52, 4.74 -0.13
BXA13/PgnJ m 2.67 1.18   10 0.374 0.443 1.21, 4.46 -0.77
BXA14/PgnJ m 2.93 1.99   10 0.63 0.681 1.02, 6.77 -0.48
BXA16/PgnJ m 2.17 1.48   7 0.561 0.685 0.5, 5.15 -1.33
BXA1/PgnJ m 2.6 0.551   3 0.318 0.212 1.96, 2.92 -0.85
BXA24/PgnJ m 2.81 0.63   6 0.257 0.224 2.06, 3.4 -0.62
BXA25/PgnJ m 3.28 2.28   8 0.806 0.695 1.14, 6.78 -0.1
BXA26/PgnJ m 3.74 1.09   8 0.385 0.291 2.34, 5.57 0.42
BXA2/PgnJ m 1.33 0.632   8 0.224 0.475 0.68, 2.73 -2.26
BXA4/PgnJ m 2.24 0.843   8 0.298 0.376 0.66, 3.16 -1.25
BXA7/PgnJ m 3.76 1.09   8 0.384 0.289 1.78, 5.13 0.44
BXA8/PgnJ m 2.41 0.818   8 0.289 0.339 1.42, 3.5 -1.06
BXD11/TyJ m 3.14 1.37   5 0.612 0.436 1.65, 4.65 -0.25
BXD12/TyJ m 3.37 1.07   8 0.378 0.318 2.19, 5.08 0.0
BXD13/TyJ m 3.71 0.685   4 0.343 0.185 2.7, 4.17 0.38
BXD14/TyJ m 2.49 0.36   8 0.127 0.145 1.85, 2.84 -0.97
BXD15/TyJ m 3.6 1.31   6 0.536 0.364 1.85, 5.35 0.26
BXD16/TyJ m 3.13 1.3   6 0.53 0.415 1.87, 5.6 -0.26
BXD18/TyJ m 3.46 0.998   7 0.377 0.289 1.38, 4.4 0.1
BXD19/TyJ m 2.77 0.728   7 0.275 0.263 1.8, 3.87 -0.66
BXD1/TyJ m 3.41 1.33   7 0.503 0.39 1.72, 5.96 0.05
BXD20/TyJ m 2.39 1.04   8 0.368 0.436 1.28, 4.07 -1.09
BXD21/TyJ m 4.25 0.955   6 0.39 0.225 3.13, 5.51 0.98
BXD24/TyJ m 4.83 2.38   4 1.19 0.493 2.52, 7.55 1.63
BXD27/TyJ m 3.97 1.07   8 0.377 0.269 2.48, 5.12 0.67
BXD28/TyJ m 3.88 0.995   4 0.497 0.257 2.48, 4.83 0.57
BXD29-Tlr4lps-2J/J m 4.59 1.47   7 0.554 0.32 2.64, 6.54 1.36
BXD2/TyJ m 2.78 0.561   4 0.281 0.202 2.25, 3.52 -0.65
BXD31/TyJ m 3.6 0.658   4 0.329 0.183 2.66, 4.19 0.26
BXD32/TyJ m 4.5 1.81   5 0.808 0.401 2.13, 6.86 1.26
BXD33/TyJ m 1.87 0.728   3 0.421 0.39 1.03, 2.36 -1.66
BXD34/TyJ m 3.35 1.05   8 0.37 0.313 2.4, 5.46 -0.02
BXD36/TyJ m 3.31 1.41   8 0.499 0.426 1.99, 6.32 -0.06
BXD38/TyJ m 2.86 1.09   8 0.385 0.381 1.14, 4.09 -0.56
BXD39/TyJ m 2.03 0.623   9 0.208 0.307 1.19, 2.96 -1.49
BXD40/TyJ m 2.43 0.765   8 0.27 0.315 1.51, 3.66 -1.04
BXD42/TyJ m 3.99 2.0   9 0.667 0.501 1.89, 6.69 0.69
BXD5/TyJ m 2.42 0.259   7 0.098 0.107 2.01, 2.77 -1.05
BXD6/TyJ m 3.49 0.844   7 0.319 0.242 2.2, 4.76 0.14
BXD8/TyJ m 4.33 1.41   8 0.497 0.325 2.76, 6.67 1.07
BXD9/TyJ m 5.07 2.55   8 0.901 0.502 1.11, 8.49 1.9
BXH10/TyJ m 3.39 1.12   10 0.355 0.331 1.6, 4.82 0.03
BXH14/TyJ m 4.28 2.5   9 0.833 0.584 1.42, 10.1 1.02
BXH19/TyJ m 2.55 0.823   14 0.22 0.323 0.85, 4.02 -0.91
BXH20/KccJ m 2.53 0.599   6 0.244 0.237 1.81, 3.29 -0.93
BXH22/KccJ m 3.64 1.61   9 0.537 0.443 1.94, 6.91 0.31
BXH2/TyJ m 2.39 0.779   15 0.201 0.326 1.02, 3.69 -1.09
BXH4/TyJ m 3.97 1.06   7 0.401 0.267 2.96, 5.49 0.67
BXH6/TyJ m 2.43 0.957   8 0.338 0.394 1.03, 3.62 -1.04
BXH7/TyJ m 2.65 0.615   3 0.355 0.232 1.96, 3.14 -0.8
BXH8/TyJ m 3.77 1.56   6 0.635 0.412 1.79, 5.24 0.45
BXH9/TyJ m 3.72 0.516   5 0.231 0.139 3.0, 4.37 0.39
C3H/HeJ m 4.13 0.68   8 0.24 0.165 3.37, 5.07 0.85
C57BL/6J m 3.65 1.45   12 0.419 0.397 1.97, 7.57 0.32
C57L/J m 6.13 1.09   8 0.385 0.178 4.97, 8.45 3.07
C58/J m 3.79 1.58   8 0.558 0.416 1.33, 5.72 0.47
CAST/EiJ m 5.59 1.67   3 0.964 0.299 3.67, 6.7 2.47
CBA/J m 4.09 0.685   11 0.207 0.167 2.84, 5.16 0.81
CE/J m 3.78 0.529   4 0.265 0.14 3.33, 4.54 0.46
DBA/2J m 5.63 1.48   12 0.426 0.262 3.51, 8.81 2.52
FVB/NJ m 3.98 1.26   12 0.364 0.317 2.41, 6.55 0.68
KK/HlJ m 3.44 1.34   7 0.507 0.39 1.77, 5.23 0.08
LG/J m 5.15 0.31   3 0.179 0.0602 4.79, 5.35 1.98
LP/J m 2.48 1.8   11 0.542 0.726 0.69, 5.5 -0.99
MA/MyJ m 4.01 0.892   4 0.446 0.223 2.86, 5.03 0.72
NOD/ShiLtJ m 3.98 2.28   8 0.808 0.574 0.93, 7.0 0.68
NON/ShiLtJ m 2.7 1.49   7 0.562 0.551 0.89, 5.09 -0.74
NZB/BlNJ m 3.26 0.911   7 0.344 0.28 1.81, 4.39 -0.12
NZW/LacJ m 2.98 0.511   4 0.256 0.171 2.4, 3.62 -0.43
PL/J m 4.32 0.186   4 0.0928 0.043 4.05, 4.47 1.06
SEA/GnJ m 5.12 1.44   7 0.546 0.282 2.93, 6.51 1.95
SM/J m 4.02 1.25   16 0.313 0.312 1.3, 6.42 0.73
SWR/J m 3.92 0.939   11 0.283 0.239 1.51, 4.73 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 4.0275 0.6234 5.2519 2.8031
A/J m 2.5 0.5576 3.5951 1.4049
AKR/J m 3.615 0.4408 4.4808 2.7492
AXB10/PgnJ m 2.75 0.7199 4.1638 1.3362
AXB12/PgnJ m 2.7738 0.4408 3.6395 1.908
AXB13/PgnJ m 3.1325 0.4408 3.9983 2.2667
AXB15/PgnJ m 1.9057 0.4713 2.8313 0.9802
AXB19a/PgnJ m 2.15 0.6234 3.3744 0.9256
AXB19/PgnJ m 2.4947 0.3219 3.1269 1.8624
AXB1/PgnJ m 2.6437 0.4408 3.5095 1.778
AXB23/PgnJ m 2.28 0.6234 3.5044 1.0556
AXB24/PgnJ m 2.4383 0.509 3.4381 1.4386
AXB2/PgnJ m 3.7275 0.4408 4.5933 2.8617
AXB4/PgnJ m 2.2 0.6234 3.4244 0.9756
AXB5/PgnJ m 3.4325 0.4408 4.2983 2.5667
AXB6/PgnJ m 3.4333 0.4156 4.2496 2.6171
AXB8/PgnJ m 3.0043 0.4713 3.9298 2.0787
B6cC3-1/KccJ m 3.49 0.4713 4.4156 2.5644
BALB/cJ m 3.4858 0.3599 4.1927 2.7789
BTBR T+ Itpr3tf/J m 3.175 0.4408 4.0408 2.3092
BUB/BnJ m 4.05 0.7199 5.4638 2.6362
BXA12/PgnJ m 3.2471 0.4713 4.1727 2.3216
BXA13/PgnJ m 2.67 0.3943 3.4444 1.8956
BXA14/PgnJ m 2.926 0.3943 3.7004 2.1516
BXA16/PgnJ m 2.1686 0.4713 3.0941 1.243
BXA1/PgnJ m 2.5967 0.7199 4.0105 1.1829
BXA24/PgnJ m 2.8083 0.509 3.8081 1.8086
BXA25/PgnJ m 3.2825 0.4408 4.1483 2.4167
BXA26/PgnJ m 3.7387 0.4408 4.6045 2.873
BXA2/PgnJ m 1.3312 0.4408 2.197 0.4655
BXA4/PgnJ m 2.2425 0.4408 3.1083 1.3767
BXA7/PgnJ m 3.7638 0.4408 4.6295 2.898
BXA8/PgnJ m 2.4125 0.4408 3.2783 1.5467
BXD11/TyJ m 3.138 0.5576 4.2331 2.0429
BXD12/TyJ m 3.3687 0.4408 4.2345 2.503
BXD13/TyJ m 3.705 0.6234 4.9294 2.4806
BXD14/TyJ m 2.4913 0.4408 3.357 1.6255
BXD15/TyJ m 3.6033 0.509 4.6031 2.6036
BXD16/TyJ m 3.1267 0.509 4.1264 2.1269
BXD18/TyJ m 3.46 0.4713 4.3856 2.5344
BXD19/TyJ m 2.7671 0.4713 3.6927 1.8416
BXD1/TyJ m 3.41 0.4713 4.3356 2.4844
BXD20/TyJ m 2.3875 0.4408 3.2533 1.5217
BXD21/TyJ m 4.245 0.509 5.2447 3.2453
BXD24/TyJ m 4.825 0.6234 6.0494 3.6006
BXD27/TyJ m 3.9687 0.4408 4.8345 3.103
BXD28/TyJ m 3.875 0.6234 5.0994 2.6506
BXD29-Tlr4lps-2J/J m 4.5857 0.4713 5.5113 3.6602
BXD2/TyJ m 2.7825 0.6234 4.0069 1.5581
BXD31/TyJ m 3.595 0.6234 4.8194 2.3706
BXD32/TyJ m 4.504 0.5576 5.5991 3.4089
BXD33/TyJ m 1.8667 0.7199 3.2805 0.4529
BXD34/TyJ m 3.3475 0.4408 4.2133 2.4817
BXD36/TyJ m 3.31 0.4408 4.1758 2.4442
BXD38/TyJ m 2.8575 0.4408 3.7233 1.9917
BXD39/TyJ m 2.0278 0.4156 2.844 1.2115
BXD40/TyJ m 2.43 0.4408 3.2958 1.5642
BXD42/TyJ m 3.9911 0.4156 4.8074 3.1748
BXD5/TyJ m 2.4171 0.4713 3.3427 1.4916
BXD6/TyJ m 3.4929 0.4713 4.4184 2.5673
BXD8/TyJ m 4.325 0.4408 5.1908 3.4592
BXD9/TyJ m 5.0725 0.4408 5.9383 4.2067
BXH10/TyJ m 3.389 0.3943 4.1634 2.6146
BXH14/TyJ m 4.2811 0.4156 5.0974 3.4648
BXH19/TyJ m 2.5514 0.3332 3.2059 1.897
BXH20/KccJ m 2.53 0.509 3.5297 1.5303
BXH22/KccJ m 3.6356 0.4156 4.4518 2.8193
BXH2/TyJ m 2.3927 0.3219 3.0249 1.7604
BXH4/TyJ m 3.9743 0.4713 4.8998 3.0487
BXH6/TyJ m 2.4262 0.4408 3.292 1.5605
BXH7/TyJ m 2.65 0.7199 4.0638 1.2362
BXH8/TyJ m 3.7733 0.509 4.7731 2.7736
BXH9/TyJ m 3.724 0.5576 4.8191 2.6289
C3H/HeJ m 4.1262 0.4408 4.992 3.2605
C57BL/6J m 3.655 0.3599 4.3619 2.9481
C57L/J m 6.1313 0.4408 6.997 5.2655
C58/J m 3.7937 0.4408 4.6595 2.928
CAST/EiJ m 5.59 0.7199 7.0038 4.1762
CBA/J m 4.0945 0.3759 4.8329 3.3562
CE/J m 3.775 0.6234 4.9994 2.5506
DBA/2J m 5.6333 0.3599 6.3402 4.9264
FVB/NJ m 3.9792 0.3599 4.6861 3.2723
KK/HlJ m 3.4357 0.4713 4.3613 2.5102
LG/J m 5.1467 0.7199 6.5605 3.7329
LP/J m 2.4764 0.3759 3.2147 1.738
MA/MyJ m 4.01 0.6234 5.2344 2.7856
NOD/ShiLtJ m 3.9763 0.4408 4.842 3.1105
NON/ShiLtJ m 2.7029 0.4713 3.6284 1.7773
NZB/BlNJ m 3.2571 0.4713 4.1827 2.3316
NZW/LacJ m 2.9825 0.6234 4.2069 1.7581
PL/J m 4.32 0.6234 5.5444 3.0956
SEA/GnJ m 5.1186 0.4713 6.0441 4.193
SM/J m 4.0163 0.3117 4.6285 3.404
SWR/J m 3.92 0.3759 4.6583 3.1817




  GWAS USING LINEAR MIXED MODELS