Project measure / variable:   HMDPpheno4   ctx_thig

ID, description, units MPD:46836   ctx_thig   contextual fear thigmotaxis, percent time spent near chamber walls, day 2   [%]  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - contextual fear thigmotaxis, percent time spent near chamber walls, day 2

CAST/EiJBXD33/TyJAXB19a/PgnJAXB2/PgnJAXB15/PgnJBXA25/PgnJAXB4/PgnJBXA7/PgnJBXA2/PgnJSM/JSEA/GnJBXA4/PgnJBXH6/TyJBXD15/TyJB6cC3-1/KccJBXD16/TyJBXA13/PgnJAXB8/PgnJAXB24/PgnJAXB19/PgnJNZW/LacJBXA12/PgnJBXD36/TyJAXB13/PgnJNZB/BlNJBUB/BnJMA/MyJBXA8/PgnJNOD/ShiLtJ129X1/SvJBXD38/TyJLG/JBXA1/PgnJBXD12/TyJBXD8/TyJBXD27/TyJBXD13/TyJAXB1/PgnJFVB/NJSWR/JBXD14/TyJA/JBXD1/TyJBXD24/TyJBXD11/TyJBXD6/TyJAXB5/PgnJLP/JC57L/JDBA/2JBXD21/TyJBXD19/TyJPL/JBXH14/TyJBXA16/PgnJBXA26/PgnJAXB6/PgnJAXB23/PgnJBXD32/TyJAXB12/PgnJBXD39/TyJBXD18/TyJBXH9/TyJBXA24/PgnJBXD5/TyJBXD29-Tlr4<lps-2J>/JAKR/JBXH20/KccJC3H/HeJC58/JBTBR T<+> Itpr3<tf>/JBXD28/TyJCBA/JBXH19/TyJBXD2/TyJNON/ShiLtJBXH4/TyJCE/JBXA14/PgnJBXD9/TyJBXD42/TyJBXD20/TyJKK/HlJBXH22/KccJBXH7/TyJC57BL/6JBXD31/TyJBXD34/TyJBXH10/TyJAXB10/PgnJBXH8/TyJBXH2/TyJBALB/cJBXD40/TyJ % 0102030405060708090100femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means61.7   %
Median of the strain means62.2   %
SD of the strain means± 15.7
Coefficient of variation (CV)0.254
Min–max range of strain means16.5   –   92.1   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 175486.3611 1886.9501 3.135 < 0.0001
Residuals 593 356929.4792 601.9047


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 94 (94)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 69.8 22.7   4 11.4 0.326 42.1, 88.6 0.52
A/J m 64.7 32.4   5 14.5 0.501 20.4, 97.8 0.19
AKR/J m 55.1 27.0   8 9.56 0.491 -0.42
AXB10/PgnJ m 27.6 15.4   3 8.92 0.56 9.76, 36.6 -2.18
AXB12/PgnJ m 58.2 30.9   8 10.9 0.53 12.7, 92.3 -0.22
AXB13/PgnJ m 71.6 22.1   8 7.82 0.309 24.7, 93.9 0.63
AXB15/PgnJ m 88.3 14.8   7 5.59 0.167 60.4, 103.0 1.7
AXB19a/PgnJ m 88.7 6.78   4 3.39 0.0764 79.4, 95.6 1.72
AXB19/PgnJ m 72.6 23.0   15 5.94 0.317 11.4, 99.2 0.69
AXB1/PgnJ m 65.3 25.6   8 9.05 0.392 18.9, 92.8 0.23
AXB23/PgnJ m 59.7 20.7   4 10.3 0.346 32.8, 80.3 -0.13
AXB24/PgnJ m 73.0 28.2   6 11.5 0.386 22.7, 98.0 0.72
AXB2/PgnJ m 88.3 8.4   8 2.97 0.0951 77.0, 98.7 1.7
AXB4/PgnJ m 84.1 17.0   4 8.48 0.202 67.8, 99.1 1.43
AXB5/PgnJ m 62.2 32.2   8 11.4 0.518 6.01, 90.8 0.03
AXB6/PgnJ m 59.7 29.5   9 9.84 0.494 13.1, 94.2 -0.13
AXB8/PgnJ m 73.6 22.5   7 8.5 0.306 30.8, 98.5 0.76
B6cC3-1/KccJ m 76.2 18.0   7 6.8 0.236 57.7, 101.0 0.92
BALB/cJ m 21.5 18.1   12 5.22 0.843 3.98, 71.7 -2.57
BTBR T+ Itpr3tf/J m 52.1 27.9   8 9.85 0.535 1.99, 83.1 -0.61
BUB/BnJ m 70.8 9.15   3 5.28 0.129 62.5, 80.6 0.58
BXA12/PgnJ m 71.9 27.0   7 10.2 0.375 13.6, 91.8 0.65
BXA13/PgnJ m 74.2 23.0   10 7.27 0.31 11.9, 89.2 0.8
BXA14/PgnJ m 49.9 29.4   10 9.29 0.588 15.4, 90.1 -0.75
BXA16/PgnJ m 60.2 45.6   7 17.2 0.757 -0.1
BXA1/PgnJ m 68.5 46.9   3 27.1 0.684 14.4, 97.3 0.43
BXA24/PgnJ m 56.7 30.1   6 12.3 0.53 8.02, 96.0 -0.32
BXA25/PgnJ m 86.4 29.1   8 10.3 0.337 15.6, 101.0 1.58
BXA26/PgnJ m 60.0 19.1   8 6.75 0.318 32.1, 91.6 -0.11
BXA2/PgnJ m 83.8 25.9   8 9.15 0.309 31.9, 101.0 1.41
BXA4/PgnJ m 79.8 16.2   8 5.72 0.203 56.7, 95.5 1.15
BXA7/PgnJ m 84.1 14.6   8 5.18 0.174 51.8, 99.4 1.43
BXA8/PgnJ m 70.1 17.6   8 6.23 0.251 35.8, 95.7 0.54
BXD11/TyJ m 64.0 19.6   5 8.78 0.307 44.9, 95.3 0.15
BXD12/TyJ m 67.7 18.7   8 6.6 0.276 34.7, 93.3 0.38
BXD13/TyJ m 66.7 30.0   4 15.0 0.449 34.5, 92.8 0.32
BXD14/TyJ m 65.3 22.6   8 7.98 0.346 36.3, 95.0 0.23
BXD15/TyJ m 77.9 20.6   6 8.4 0.264 43.6, 98.1 1.03
BXD16/TyJ m 75.2 17.9   6 7.31 0.238 50.2, 98.0 0.86
BXD18/TyJ m 57.1 20.0   7 7.57 0.351 21.4, 85.8 -0.3
BXD19/TyJ m 61.4 29.5   7 11.2 0.48 16.2, 94.0 -0.02
BXD1/TyJ m 64.5 22.6   7 8.56 0.351 36.6, 96.9 0.18
BXD20/TyJ m 46.4 25.1   8 8.87 0.541 8.47, 89.9 -0.98
BXD21/TyJ m 61.8 13.5   6 5.52 0.219 43.6, 78.0 0.01
BXD24/TyJ m 64.1 26.1   4 13.1 0.407 26.4, 85.2 0.15
BXD27/TyJ m 67.2 17.6   8 6.23 0.262 37.9, 91.2 0.35
BXD28/TyJ m 51.5 27.6   4 13.8 0.535 20.0, 86.3 -0.65
BXD29-Tlr4lps-2J/J m 56.4 18.0   7 6.79 0.318 29.7, 76.0 -0.34
BXD2/TyJ m 50.8 29.4   4 14.7 0.579 25.9, 90.2 -0.7
BXD31/TyJ m 38.7 31.9   4 16.0 0.826 11.2, 84.1 -1.47
BXD32/TyJ m 58.2 33.5   5 15.0 0.575 0.44, 87.4 -0.22
BXD33/TyJ m 91.2 10.9   3 6.31 0.12 78.6, 97.6 1.88
BXD34/TyJ m 34.2 20.8   8 7.35 0.607 2.56, 65.1 -1.76
BXD36/TyJ m 71.9 35.2   8 12.4 0.489 12.2, 96.9 0.65
BXD38/TyJ m 69.1 13.9   8 4.93 0.202 47.6, 87.2 0.47
BXD39/TyJ m 58.1 19.2   9 6.4 0.33 24.2, 82.2 -0.23
BXD40/TyJ m 16.5 25.5   8 9.03 1.55 -2.89
BXD42/TyJ m 48.0 24.8   9 8.26 0.516 18.6, 81.6 -0.88
BXD5/TyJ m 56.5 23.2   7 8.76 0.41 7.04, 74.2 -0.33
BXD6/TyJ m 63.8 29.7   7 11.2 0.465 2.18, 86.1 0.13
BXD8/TyJ m 67.4 29.5   8 10.4 0.438 1.97, 94.3 0.36
BXD9/TyJ m 48.1 23.5   8 8.29 0.488 3.46, 76.4 -0.87
BXH10/TyJ m 33.6 33.0   10 10.4 0.982 -1.8
BXH14/TyJ m 60.5 27.0   9 9.0 0.447 22.7, 94.9 -0.08
BXH19/TyJ m 50.9 36.3   14 9.71 0.714 -0.69
BXH20/KccJ m 54.8 29.0   6 11.8 0.529 9.02, 81.8 -0.44
BXH22/KccJ m 45.2 29.4   9 9.8 0.65 0.46, 90.5 -1.05
BXH2/TyJ m 22.3 26.0   15 6.71 1.17 0.21, 82.5 -2.52
BXH4/TyJ m 50.6 22.2   7 8.41 0.439 16.8, 79.0 -0.71
BXH6/TyJ m 79.4 13.5   8 4.79 0.171 57.2, 101.0 1.13
BXH7/TyJ m 43.8 38.3   3 22.1 0.875 2.24, 77.8 -1.14
BXH8/TyJ m 27.4 16.0   6 6.55 0.585 0.13, 42.9 -2.19
BXH9/TyJ m 56.8 14.0   5 6.27 0.247 41.7, 76.4 -0.31
C3H/HeJ m 54.1 14.5   8 5.14 0.269 32.6, 73.4 -0.49
C57BL/6J m 39.8 25.2   12 7.29 0.635 0.77, 75.0 -1.4
C57L/J m 62.1 20.0   8 7.07 0.322 23.6, 79.2 0.02
C58/J m 53.8 23.9   8 8.45 0.444 28.4, 82.2 -0.51
CAST/EiJ m 92.1 7.65   3 4.42 0.0831 86.7, 101.0 1.94
CBA/J m 51.5 13.2   11 3.99 0.257 35.4, 72.9 -0.65
CE/J m 50.1 33.0   4 16.5 0.659 5.87, 84.0 -0.74
DBA/2J m 61.9 24.5   12 7.07 0.396 16.5, 98.9 0.01
FVB/NJ m 65.3 24.7   12 7.12 0.378 22.2, 98.0 0.23
KK/HlJ m 45.2 25.5   7 9.63 0.563 15.9, 80.2 -1.05
LG/J m 68.9 0.361   3 0.208 0.00524 68.5, 69.2 0.46
LP/J m 62.2 31.9   11 9.62 0.513 2.86, 103.0 0.03
MA/MyJ m 70.5 11.8   4 5.89 0.167 56.3, 82.3 0.56
NOD/ShiLtJ m 69.9 37.2   8 13.2 0.532 7.92, 103.0 0.52
NON/ShiLtJ m 50.6 28.4   7 10.7 0.561 4.01, 98.3 -0.71
NZB/BlNJ m 71.4 20.7   7 7.82 0.29 31.2, 87.0 0.62
NZW/LacJ m 72.3 16.1   4 8.06 0.223 50.9, 88.0 0.68
PL/J m 61.0 9.06   4 4.53 0.149 48.3, 69.8 -0.05
SEA/GnJ m 79.8 8.91   7 3.37 0.112 65.1, 90.8 1.15
SM/J m 80.2 16.3   16 4.07 0.203 44.9, 103.0 1.18
SWR/J m 65.3 19.8   11 5.97 0.303 30.2, 88.5 0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 69.765 12.2669 93.8568 45.6732
A/J m 64.694 10.9718 86.2424 43.1456
AKR/J m 55.0562 8.674 72.0917 38.0208
AXB10/PgnJ m 27.5933 14.1646 55.4121 0.0
AXB12/PgnJ m 58.25 8.674 75.2855 41.2145
AXB13/PgnJ m 71.5987 8.674 88.6342 54.5633
AXB15/PgnJ m 88.3157 9.2729 106.5274 70.104
AXB19a/PgnJ m 88.7125 12.2669 112.8043 64.6207
AXB19/PgnJ m 72.5593 6.3346 85.0003 60.1184
AXB1/PgnJ m 65.3088 8.674 82.3442 48.2733
AXB23/PgnJ m 59.7225 12.2669 83.8143 35.6307
AXB24/PgnJ m 73.035 10.0159 92.7059 53.3641
AXB2/PgnJ m 88.32 8.674 105.3555 71.2845
AXB4/PgnJ m 84.15 12.2669 108.2418 60.0582
AXB5/PgnJ m 62.2262 8.674 79.2617 45.1908
AXB6/PgnJ m 59.7344 8.1779 75.7956 43.6732
AXB8/PgnJ m 73.5929 9.2729 91.8045 55.3812
B6cC3-1/KccJ m 76.1729 9.2729 94.3845 57.9612
BALB/cJ m 21.455 7.0823 35.3644 7.5456
BTBR T+ Itpr3tf/J m 52.105 8.674 69.1405 35.0695
BUB/BnJ m 70.7933 14.1646 98.6121 42.9745
BXA12/PgnJ m 71.9357 9.2729 90.1474 53.724
BXA13/PgnJ m 74.165 7.7583 89.402 58.928
BXA14/PgnJ m 49.936 7.7583 65.173 34.699
BXA16/PgnJ m 60.2414 9.2729 78.4531 42.0297
BXA1/PgnJ m 68.5067 14.1646 96.3255 40.6879
BXA24/PgnJ m 56.7367 10.0159 76.4075 37.0658
BXA25/PgnJ m 86.4063 8.674 103.4417 69.3708
BXA26/PgnJ m 59.9937 8.674 77.0292 42.9583
BXA2/PgnJ m 83.7875 8.674 100.823 66.752
BXA4/PgnJ m 79.8375 8.674 96.873 62.802
BXA7/PgnJ m 84.0713 8.674 101.1067 67.0358
BXA8/PgnJ m 70.1075 8.674 87.143 53.072
BXD11/TyJ m 64.02 10.9718 85.5684 42.4716
BXD12/TyJ m 67.7137 8.674 84.7492 50.6783
BXD13/TyJ m 66.665 12.2669 90.7568 42.5732
BXD14/TyJ m 65.2525 8.674 82.288 48.217
BXD15/TyJ m 77.9033 10.0159 97.5742 58.2325
BXD16/TyJ m 75.1667 10.0159 94.8375 55.4958
BXD18/TyJ m 57.0929 9.2729 75.3045 38.8812
BXD19/TyJ m 61.4414 9.2729 79.6531 43.2297
BXD1/TyJ m 64.5143 9.2729 82.726 46.3026
BXD20/TyJ m 46.3787 8.674 63.4142 29.3433
BXD21/TyJ m 61.8333 10.0159 81.5042 42.1625
BXD24/TyJ m 64.125 12.2669 88.2168 40.0332
BXD27/TyJ m 67.2125 8.674 84.248 50.177
BXD28/TyJ m 51.52 12.2669 75.6118 27.4282
BXD29-Tlr4lps-2J/J m 56.3757 9.2729 74.5874 38.164
BXD2/TyJ m 50.7875 12.2669 74.8793 26.6957
BXD31/TyJ m 38.68 12.2669 62.7718 14.5882
BXD32/TyJ m 58.212 10.9718 79.7604 36.6636
BXD33/TyJ m 91.2067 14.1646 119.0255 63.3879
BXD34/TyJ m 34.2475 8.674 51.283 17.212
BXD36/TyJ m 71.9413 8.674 88.9767 54.9058
BXD38/TyJ m 69.1 8.674 86.1355 52.0645
BXD39/TyJ m 58.1378 8.1779 74.199 42.0766
BXD40/TyJ m 16.4588 8.674 33.4942 0.0
BXD42/TyJ m 47.9922 8.1779 64.0534 31.931
BXD5/TyJ m 56.5186 9.2729 74.7303 38.3069
BXD6/TyJ m 63.8486 9.2729 82.0603 45.6369
BXD8/TyJ m 67.4187 8.674 84.4542 50.3833
BXD9/TyJ m 48.0813 8.674 65.1167 31.0458
BXH10/TyJ m 33.591 7.7583 48.828 18.354
BXH14/TyJ m 60.4544 8.1779 76.5156 44.3932
BXH19/TyJ m 50.855 6.5569 63.7326 37.9774
BXH20/KccJ m 54.7883 10.0159 74.4592 35.1175
BXH22/KccJ m 45.2333 8.1779 61.2945 29.1721
BXH2/TyJ m 22.2673 6.3346 34.7083 9.8264
BXH4/TyJ m 50.6357 9.2729 68.8474 32.424
BXH6/TyJ m 79.3538 8.674 96.3892 62.3183
BXH7/TyJ m 43.8167 14.1646 71.6355 15.9979
BXH8/TyJ m 27.43 10.0159 47.1009 7.7591
BXH9/TyJ m 56.808 10.9718 78.3564 35.2596
C3H/HeJ m 54.0675 8.674 71.103 37.032
C57BL/6J m 39.7642 7.0823 53.6736 25.8548
C57L/J m 62.0875 8.674 79.123 45.052
C58/J m 53.7737 8.674 70.8092 36.7383
CAST/EiJ m 92.1433 14.1646 119.9621 64.3245
CBA/J m 51.5318 7.3972 66.0597 37.0039
CE/J m 50.08 12.2669 74.1718 25.9882
DBA/2J m 61.925 7.0823 75.8344 48.0156
FVB/NJ m 65.2708 7.0823 79.1802 51.3614
KK/HlJ m 45.2243 9.2729 63.436 27.0126
LG/J m 68.8833 14.1646 96.7021 41.0645
LP/J m 62.2327 7.3972 76.7606 47.7048
MA/MyJ m 70.48 12.2669 94.5718 46.3882
NOD/ShiLtJ m 69.8987 8.674 86.9342 52.8633
NON/ShiLtJ m 50.6471 9.2729 68.8588 32.4355
NZB/BlNJ m 71.4486 9.2729 89.6603 53.2369
NZW/LacJ m 72.255 12.2669 96.3468 48.1632
PL/J m 60.9775 12.2669 85.0693 36.8857
SEA/GnJ m 79.8286 9.2729 98.0403 61.6169
SM/J m 80.2094 6.1334 92.2553 68.1635
SWR/J m 65.2836 7.3972 79.8115 50.7557




  GWAS USING LINEAR MIXED MODELS

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