Project measure / variable:   HMDPpheno4   ftr_post_thig

ID, description, units MPD:46802   ftr_post_thig   fear training, percent time spent near chamber walls, day1   [%]  post-stimulus  
Data set, strains HMDPpheno4   HMDP w/par   94 strains     sex: m     age: 10wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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HMDPpheno4 - fear training, percent time spent near chamber walls, day1 post-stimulus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means69.3   %
Median of the strain means69.8   %
SD of the strain means± 12.6
Coefficient of variation (CV)0.182
Min–max range of strain means43.2   –   95.1   %
Mean sample size per strain7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 93 109065.7093 1172.7496 2.7145 < 0.0001
Residuals 593 256191.1122 432.0255


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 64.8 15.4   4 7.68 0.237 47.9, 80.7 -0.35
A/J m 88.8 5.53   5 2.47 0.0623 82.5, 93.2 1.55
AKR/J m 69.0 20.6   8 7.27 0.298 33.0, 94.8 -0.02
AXB10/PgnJ m 58.1 22.7   3 13.1 0.39 32.4, 75.1 -0.88
AXB12/PgnJ m 61.1 29.7   8 10.5 0.486 13.2, 91.2 -0.65
AXB13/PgnJ m 78.3 15.9   8 5.62 0.203 55.5, 99.5 0.71
AXB15/PgnJ m 74.5 15.4   7 5.84 0.207 55.9, 99.0 0.41
AXB19a/PgnJ m 78.4 13.1   4 6.54 0.167 68.6, 97.5 0.72
AXB19/PgnJ m 80.9 18.5   15 4.77 0.228 28.1, 99.4 0.92
AXB1/PgnJ m 78.1 17.6   8 6.21 0.225 44.6, 96.8 0.7
AXB23/PgnJ m 95.1 6.01   4 3.01 0.0632 86.2, 99.4 2.04
AXB24/PgnJ m 70.4 14.5   6 5.91 0.206 57.8, 95.3 0.09
AXB2/PgnJ m 86.9 5.58   8 1.97 0.0642 81.8, 94.3 1.4
AXB4/PgnJ m 53.1 29.6   4 14.8 0.558 25.8, 82.4 -1.28
AXB5/PgnJ m 67.4 18.9   8 6.7 0.281 35.2, 91.6 -0.15
AXB6/PgnJ m 71.6 17.6   9 5.86 0.245 34.8, 92.8 0.18
AXB8/PgnJ m 86.0 8.51   7 3.22 0.099 73.1, 94.6 1.32
B6cC3-1/KccJ m 51.9 19.2   7 7.26 0.37 15.3, 72.5 -1.38
BALB/cJ m 43.2 24.3   12 7.03 0.563 1.9, 84.5 -2.06
BTBR T+ Itpr3tf/J m 51.3 15.3   8 5.42 0.299 21.1, 69.7 -1.42
BUB/BnJ m 69.6 0.345   3 0.199 0.00496 69.3, 70.0 0.03
BXA12/PgnJ m 85.9 13.1   7 4.93 0.152 58.2, 95.7 1.32
BXA13/PgnJ m 67.4 22.2   10 7.02 0.33 39.0, 99.2 -0.15
BXA14/PgnJ m 49.9 24.2   10 7.64 0.485 5.61, 73.8 -1.53
BXA16/PgnJ m 89.5 12.3   7 4.64 0.137 69.0, 99.3 1.6
BXA1/PgnJ m 79.9 11.3   3 6.53 0.142 68.7, 91.4 0.84
BXA24/PgnJ m 66.2 27.1   6 11.1 0.41 33.3, 94.5 -0.24
BXA25/PgnJ m 73.1 24.3   8 8.58 0.332 26.3, 96.9 0.3
BXA26/PgnJ m 76.3 20.9   8 7.38 0.273 33.4, 95.0 0.56
BXA2/PgnJ m 81.8 6.64   8 2.35 0.0812 69.0, 90.7 0.99
BXA4/PgnJ m 71.9 32.6   8 11.5 0.453 18.3, 99.6 0.21
BXA7/PgnJ m 88.8 8.28   8 2.93 0.0933 72.1, 97.8 1.55
BXA8/PgnJ m 71.4 21.7   8 7.69 0.305 31.1, 96.6 0.17
BXD11/TyJ m 75.7 22.0   5 9.86 0.291 49.2, 99.5 0.51
BXD12/TyJ m 70.9 24.6   8 8.7 0.347 37.3, 98.1 0.13
BXD13/TyJ m 66.6 9.32   4 4.66 0.14 53.3, 74.9 -0.21
BXD14/TyJ m 83.8 19.5   8 6.89 0.232 53.1, 99.8 1.15
BXD15/TyJ m 88.5 8.51   6 3.47 0.0961 78.8, 100.0 1.52
BXD16/TyJ m 75.9 22.6   6 9.21 0.297 34.0, 99.2 0.52
BXD18/TyJ m 75.0 13.7   7 5.16 0.182 52.7, 93.8 0.45
BXD19/TyJ m 78.3 16.6   7 6.29 0.213 51.4, 95.4 0.71
BXD1/TyJ m 67.1 20.3   7 7.68 0.303 40.0, 92.9 -0.17
BXD20/TyJ m 79.2 21.5   8 7.6 0.271 37.0, 98.6 0.79
BXD21/TyJ m 67.9 20.9   6 8.52 0.307 29.1, 85.4 -0.11
BXD24/TyJ m 92.7 6.23   4 3.11 0.0672 84.9, 98.6 1.85
BXD27/TyJ m 85.3 17.5   8 6.18 0.205 49.4, 99.3 1.27
BXD28/TyJ m 61.8 25.3   4 12.7 0.41 23.9, 77.1 -0.59
BXD29-Tlr4lps-2J/J m 72.3 11.5   7 4.34 0.159 62.7, 88.7 0.24
BXD2/TyJ m 65.2 22.2   4 11.1 0.34 42.1, 87.2 -0.32
BXD31/TyJ m 49.5 25.1   4 12.6 0.508 19.0, 78.6 -1.57
BXD32/TyJ m 80.7 16.9   5 7.55 0.209 56.0, 98.0 0.9
BXD33/TyJ m 78.2 23.1   3 13.3 0.295 51.8, 94.5 0.71
BXD34/TyJ m 65.9 29.8   8 10.6 0.453 5.61, 94.9 -0.27
BXD36/TyJ m 56.5 32.8   8 11.6 0.58 7.46, 95.6 -1.01
BXD38/TyJ m 84.1 18.2   8 6.42 0.216 47.5, 98.7 1.17
BXD39/TyJ m 74.3 29.0   9 9.67 0.39 5.65, 99.8 0.4
BXD40/TyJ m 47.4 40.4   8 14.3 0.852 1.63, 92.8 -1.73
BXD42/TyJ m 50.1 19.1   9 6.38 0.382 24.2, 79.7 -1.52
BXD5/TyJ m 64.4 20.6   7 7.79 0.32 41.2, 99.8 -0.39
BXD6/TyJ m 77.2 13.6   7 5.14 0.176 55.7, 95.2 0.63
BXD8/TyJ m 79.8 24.6   8 8.69 0.308 40.5, 97.3 0.83
BXD9/TyJ m 78.4 19.3   8 6.81 0.245 42.4, 96.1 0.72
BXH10/TyJ m 43.9 24.0   10 7.6 0.547 0.03, 81.8 -2.01
BXH14/TyJ m 60.6 20.4   9 6.79 0.336 14.2, 82.2 -0.69
BXH19/TyJ m 78.1 13.0   14 3.48 0.167 49.3, 92.2 0.7
BXH20/KccJ m 60.1 24.2   6 9.9 0.403 23.9, 90.2 -0.73
BXH22/KccJ m 66.1 16.7   9 5.56 0.252 45.9, 99.7 -0.25
BXH2/TyJ m 45.9 35.0   15 9.04 0.764 7.12, 98.5 -1.85
BXH4/TyJ m 57.9 26.7   7 10.1 0.46 21.1, 89.6 -0.9
BXH6/TyJ m 60.5 30.5   8 10.8 0.504 8.28, 92.2 -0.69
BXH7/TyJ m 81.6 16.0   3 9.23 0.196 63.8, 94.6 0.98
BXH8/TyJ m 69.9 22.7   6 9.28 0.325 32.1, 99.3 0.05
BXH9/TyJ m 70.0 17.4   5 7.8 0.249 40.9, 84.4 0.06
C3H/HeJ m 62.4 17.6   8 6.21 0.281 45.6, 98.1 -0.54
C57BL/6J m 63.1 16.6   12 4.79 0.263 29.9, 89.3 -0.49
C57L/J m 48.9 23.1   8 8.18 0.473 14.2, 78.9 -1.61
C58/J m 48.3 16.8   8 5.95 0.348 25.2, 71.7 -1.66
CAST/EiJ m 68.0 23.3   3 13.4 0.343 41.8, 86.5 -0.1
CBA/J m 68.2 14.4   11 4.34 0.211 45.0, 89.2 -0.09
CE/J m 92.5 7.54   4 3.77 0.0815 81.6, 98.6 1.84
DBA/2J m 55.8 29.6   12 8.56 0.532 15.2, 94.7 -1.07
FVB/NJ m 64.2 13.8   12 3.99 0.215 47.0, 86.0 -0.4
KK/HlJ m 64.0 24.0   7 9.06 0.375 32.9, 88.4 -0.42
LG/J m 47.3 19.3   3 11.2 0.409 35.4, 69.7 -1.74
LP/J m 65.0 28.1   11 8.47 0.433 13.6, 94.1 -0.34
MA/MyJ m 76.9 7.9   4 3.95 0.103 69.7, 86.9 0.6
NOD/ShiLtJ m 81.6 16.8   8 5.95 0.206 41.5, 93.1 0.98
NON/ShiLtJ m 67.6 4.77   7 1.8 0.0706 61.0, 72.7 -0.13
NZB/BlNJ m 76.6 8.16   7 3.08 0.107 66.3, 87.1 0.58
NZW/LacJ m 60.3 9.21   4 4.61 0.153 52.4, 73.6 -0.71
PL/J m 48.6 25.3   4 12.6 0.52 16.1, 74.5 -1.64
SEA/GnJ m 58.5 25.7   7 9.71 0.439 14.4, 95.7 -0.85
SM/J m 75.1 11.8   16 2.95 0.157 48.6, 94.6 0.46
SWR/J m 51.1 15.7   11 4.72 0.307 23.6, 76.8 -1.44


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 64.8325 10.3926 85.2433 44.4217
A/J m 88.76 9.2954 107.016 70.504
AKR/J m 68.9738 7.3487 83.4064 54.5411
AXB10/PgnJ m 58.1433 12.0004 81.7117 34.575
AXB12/PgnJ m 61.1188 7.3487 75.5514 46.6861
AXB13/PgnJ m 78.3487 7.3487 92.7814 63.9161
AXB15/PgnJ m 74.4714 7.8561 89.9005 59.0423
AXB19a/PgnJ m 78.37 10.3926 98.7808 57.9592
AXB19/PgnJ m 80.8973 5.3667 91.4374 70.3572
AXB1/PgnJ m 78.1013 7.3487 92.5339 63.6686
AXB23/PgnJ m 95.0675 10.3926 115.4783 74.6567
AXB24/PgnJ m 70.43 8.4855 87.0954 53.7646
AXB2/PgnJ m 86.905 7.3487 101.3376 72.4724
AXB4/PgnJ m 53.0825 10.3926 73.4933 32.6717
AXB5/PgnJ m 67.3712 7.3487 81.8039 52.9386
AXB6/PgnJ m 71.6211 6.9284 85.2283 58.0139
AXB8/PgnJ m 85.95 7.8561 101.3791 70.5209
B6cC3-1/KccJ m 51.95 7.8561 67.3791 36.5209
BALB/cJ m 43.195 6.0002 54.9792 31.4108
BTBR T+ Itpr3tf/J m 51.29 7.3487 65.7226 36.8574
BUB/BnJ m 69.6333 12.0004 93.2017 46.065
BXA12/PgnJ m 85.93 7.8561 101.3591 70.5009
BXA13/PgnJ m 67.361 6.5729 80.2699 54.4521
BXA14/PgnJ m 49.878 6.5729 62.7869 36.9691
BXA16/PgnJ m 89.4671 7.8561 104.8963 74.038
BXA1/PgnJ m 79.89 12.0004 103.4584 56.3216
BXA24/PgnJ m 66.2067 8.4855 82.872 49.5413
BXA25/PgnJ m 73.0788 7.3487 87.5114 58.6461
BXA26/PgnJ m 76.35 7.3487 90.7826 61.9174
BXA2/PgnJ m 81.7988 7.3487 96.2314 67.3661
BXA4/PgnJ m 71.9425 7.3487 86.3751 57.5099
BXA7/PgnJ m 88.765 7.3487 103.1976 74.3324
BXA8/PgnJ m 71.3612 7.3487 85.7939 56.9286
BXD11/TyJ m 75.73 9.2954 93.986 57.474
BXD12/TyJ m 70.8575 7.3487 85.2901 56.4249
BXD13/TyJ m 66.62 10.3926 87.0308 46.2092
BXD14/TyJ m 83.8412 7.3487 98.2739 69.4086
BXD15/TyJ m 88.5283 8.4855 105.1937 71.863
BXD16/TyJ m 75.9467 8.4855 92.612 59.2813
BXD18/TyJ m 74.9943 7.8561 90.4234 59.5652
BXD19/TyJ m 78.2657 7.8561 93.6948 62.8366
BXD1/TyJ m 67.12 7.8561 82.5491 51.6909
BXD20/TyJ m 79.2063 7.3487 93.6389 64.7736
BXD21/TyJ m 67.9317 8.4855 84.597 51.2663
BXD24/TyJ m 92.6575 10.3926 113.0683 72.2467
BXD27/TyJ m 85.3212 7.3487 99.7539 70.8886
BXD28/TyJ m 61.7575 10.3926 82.1683 41.3467
BXD29-Tlr4lps-2J/J m 72.3186 7.8561 87.7477 56.8895
BXD2/TyJ m 65.2275 10.3926 85.6383 44.8167
BXD31/TyJ m 49.52 10.3926 69.9308 29.1092
BXD32/TyJ m 80.722 9.2954 98.978 62.466
BXD33/TyJ m 78.1667 12.0004 101.735 54.5983
BXD34/TyJ m 65.8563 7.3487 80.2889 51.4236
BXD36/TyJ m 56.4725 7.3487 70.9051 42.0399
BXD38/TyJ m 84.0563 7.3487 98.4889 69.6236
BXD39/TyJ m 74.3178 6.9284 87.925 60.7106
BXD40/TyJ m 47.4475 7.3487 61.8801 33.0149
BXD42/TyJ m 50.1467 6.9284 63.7539 36.5395
BXD5/TyJ m 64.3843 7.8561 79.8134 48.9552
BXD6/TyJ m 77.25 7.8561 92.6791 61.8209
BXD8/TyJ m 79.8075 7.3487 94.2401 65.3749
BXD9/TyJ m 78.4375 7.3487 92.8701 64.0049
BXH10/TyJ m 43.883 6.5729 56.7919 30.9741
BXH14/TyJ m 60.6311 6.9284 74.2383 47.0239
BXH19/TyJ m 78.0843 5.5551 88.9943 67.1743
BXH20/KccJ m 60.1017 8.4855 76.767 43.4363
BXH22/KccJ m 66.1267 6.9284 79.7339 52.5195
BXH2/TyJ m 45.864 5.3667 56.4041 35.3239
BXH4/TyJ m 57.8886 7.8561 73.3177 42.4595
BXH6/TyJ m 60.5375 7.3487 74.9701 46.1049
BXH7/TyJ m 81.6333 12.0004 105.2017 58.065
BXH8/TyJ m 69.8583 8.4855 86.5237 53.193
BXH9/TyJ m 69.998 9.2954 88.254 51.742
C3H/HeJ m 62.44 7.3487 76.8726 48.0074
C57BL/6J m 63.08 6.0002 74.8642 51.2958
C57L/J m 48.8938 7.3487 63.3264 34.4611
C58/J m 48.3088 7.3487 62.7414 33.8761
CAST/EiJ m 67.9733 12.0004 91.5417 44.405
CBA/J m 68.2055 6.267 80.5136 55.8973
CE/J m 92.485 10.3926 112.8958 72.0742
DBA/2J m 55.78 6.0002 67.5642 43.9958
FVB/NJ m 64.2417 6.0002 76.0258 52.4575
KK/HlJ m 63.9771 7.8561 79.4063 48.548
LG/J m 47.3333 12.0004 70.9017 23.765
LP/J m 64.9545 6.267 77.2627 52.6464
MA/MyJ m 76.895 10.3926 97.3058 56.4842
NOD/ShiLtJ m 81.6212 7.3487 96.0539 67.1886
NON/ShiLtJ m 67.6229 7.8561 83.052 52.1937
NZB/BlNJ m 76.5514 7.8561 91.9805 61.1223
NZW/LacJ m 60.265 10.3926 80.6758 39.8542
PL/J m 48.615 10.3926 69.0258 28.2042
SEA/GnJ m 58.51 7.8561 73.9391 43.0809
SM/J m 75.1131 5.1963 85.3185 64.9077
SWR/J m 51.0782 6.267 63.3864 38.77




  GWAS USING LINEAR MIXED MODELS