Phenotype measure:   Chesler2   gonad_fat_wt

ID, description, units MPD:43489   gonad_fat_wt   gonadal fat pad weight   [g]
Data set, strains Chesler2   CC diallel w/par   39 strains     sex: both     age: 7-15wks
Procedure fat pad weights
Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - gonadal fat pad weight



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 0.427 2.07 1.44 0.486 1.79 0.241 0.0815
A ♀ 0.287 1.50 0.593 1.14 4.80 0.477
B6 ♀ 0.991 0.669 0.127 0.627 2.10 0.137 0.153
CAST ♀ 0.242 0.248
NOD ♀ 0.773 0.0587 0.279 0.205 0.293
NZO ♀ 4.28 8.86 4.98 12.5 7.40 7.03
PWK ♀ 1.35 0.975 0.624 0.0590
WSB ♀ 0.352 0.186

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 0.508 1.67 1.64 1.47 0.650 0.137
A ♀ 0.355 1.27 1.33 1.02 1.47 1.34
B6 ♀ 1.16 1.42 0.391 2.47 0.365 0.174
CAST ♀ 1.06 0.485 0.263 0.911
NOD ♀ 0.983 1.62 1.71 0.942 2.92 0.910 0.356
NZO ♀ 2.54 3.75 1.25 0.895 2.33
PWK ♀ 1.10 1.13 1.50 0.762
WSB ♀ 0.244

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains39 strains
Mean of the strain means1.82   g 1.19   g
Median of the strain means0.624   g 1.10   g
SD of the strain means± 2.82 ± 0.795
Coefficient of variation (CV)1.55 0.667
Min–max range of strain means0.0587   –   12.5   g 0.137   –   3.75   g
Mean sample size per strain3.1   mice 2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14.1593 14.1593 19.5335 < 0.0001
strain 19 521.6256 27.454 37.8742 < 0.0001
sex:strain 19 242.8185 12.7799 17.6306 < 0.0001
Residuals 110 79.7359 0.7249


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.427 0.32   5 0.143 0.75 0.088, 0.902 -0.49
129S1/SvImJ m 0.508 0.216   6 0.0881 0.424 0.261, 0.79 -0.86
129SAF1 f 2.07 0.383   2   0.271 0.185 1.8, 2.34 0.09
129SAF1 m 1.67 0.614   5 0.275 0.368 0.757, 2.39 0.6
129SB6F1 f 1.44 0.0   1   0.0 0.0 1.44, 1.44 -0.13
129SB6F1 m 1.64 0.591   3 0.341 0.36 0.958, 1.99 0.56
129SNODF1 f 0.486 0.0   1   0.0 0.0 0.486, 0.486 -0.47
129SNZOF1 f 1.79 0.0   1   0.0 0.0 1.79, 1.79 -0.01
129SNZOF1 m 1.47 0.213   3 0.123 0.145 1.3, 1.71 0.35
129SPWKF1 f 0.241 0.146   3 0.0841 0.604 0.135, 0.407 -0.56
129SPWKF1 m 0.65 0.46   2   0.326 0.708 0.325, 0.976 -0.68
129SWSBF1 f 0.0815 0.0573   4 0.0286 0.703 -0.62
129SWSBF1 m 0.137 0.00566   2   0.004 0.0413 0.133, 0.141 -1.33
AB6F1 f 1.5 0.355   2   0.251 0.237 1.24, 1.75 -0.11
AB6F1 m 1.27 0.0   1   0.0 0.0 1.27, 1.27 0.1
ACASTF1 f 0.593 0.26   4 0.13 0.438 0.219, 0.818 -0.43
ACASTF1 m 1.33 0.334   4 0.167 0.25 0.87, 1.62 0.17
A/J f 0.287 0.146   2   0.103 0.508 0.184, 0.39 -0.54
A/J m 0.355 0.0915   3 0.0528 0.258 0.263, 0.446 -1.05
ANODF1 f 1.14 0.0   1   0.0 0.0 1.14, 1.14 -0.24
ANODF1 m 1.02 0.0495   2   0.035 0.0487 0.982, 1.05 -0.22
ANZOF1 f 4.8 1.39   11 0.419 0.289 2.11, 7.19 1.06
ANZOF1 m 1.47 0.0   1   0.0 0.0 1.47, 1.47 0.35
APWKF1 f 0.477 0.241   2   0.17 0.506 0.306, 0.647 -0.48
APWKF1 m 1.34 0.483   3 0.279 0.361 0.929, 1.87 0.19
B6129SF1/J f 0.991 0.0   1   0.0 0.0 0.991, 0.991 -0.29
B6AF1/J m 1.16 0.465   2   0.329 0.4 0.833, 1.49 -0.04
B6CASTF1 f 0.127 0.0361   4 0.0181 0.285 0.084, 0.166 -0.6
B6CASTF1 m 0.391 0.332   2   0.234 0.849 0.156, 0.625 -1.01
B6NODF1 f 0.627 0.0   1   0.0 0.0 0.627, 0.627 -0.42
B6NZOF1 f 2.1 1.11   3 0.639 0.526 1.05, 3.26 0.1
B6NZOF1 m 2.47 0.0   1   0.0 0.0 2.47, 2.47 1.61
B6PWKF1 f 0.137 0.0   1   0.0 0.0 0.137, 0.137 -0.6
B6PWKF1 m 0.365 0.151   3 0.0869 0.413 0.207, 0.507 -1.04
B6WSBF1 f 0.153 0.0772   8 0.0273 0.504 0.061, 0.308 -0.59
B6WSBF1 m 0.174 0.048   3 0.0277 0.276 0.127, 0.223 -1.28
C57BL/6J f 0.669 0.466   5 0.208 0.696 0.235, 1.42 -0.41
C57BL/6J m 1.42 0.801   5 0.358 0.565 0.734, 2.79 0.29
CAST129SF1 m 1.06 0.49   5 0.219 0.465 0.572, 1.85 -0.17
CASTB6F1 m 0.485 0.0   1   0.0 0.0 0.485, 0.485 -0.89
CAST/EiJ f 0.242 0.122   2   0.0865 0.504 0.156, 0.329 -0.56
CAST/EiJ m 0.263 0.117   3 0.0676 0.445 0.14, 0.373 -1.17
CASTNODF1 f 0.248 0.119   3 0.0689 0.482 0.154, 0.382 -0.56
CASTNODF1 m 0.911 0.604   5 0.27 0.663 0.353, 1.81 -0.35
NOD129SF1 m 0.983 0.0   1   0.0 0.0 0.983, 0.983 -0.26
NODAF1 m 1.62 0.442   2   0.313 0.273 1.3, 1.93 0.54
NODB6F1 f 0.773 0.0   1   0.0 0.0 0.773, 0.773 -0.37
NODB6F1 m 1.71 0.46   2   0.325 0.269 1.38, 2.03 0.65
NODCASTF1 f 0.0587 0.0246   7 0.00929 0.418 0.033, 0.089 -0.62
NODCASTF1 m 0.942 0.139   2   0.098 0.147 0.844, 1.04 -0.31
NODNZOF1 m 2.92 0.0   1   0.0 0.0 2.92, 2.92 2.17
NODPWKF1 f 0.205 0.148   2   0.104 0.723 0.1, 0.309 -0.57
NODPWKF1 m 0.91 0.484   8 0.171 0.532 0.384, 1.79 -0.36
NOD/ShiLtJ f 0.279 0.394   2   0.278 1.41 -0.55
NODWSBF1 f 0.293 0.163   5 0.0731 0.557 0.143, 0.554 -0.54
NODWSBF1 m 0.356 0.0686   2   0.0485 0.193 0.307, 0.404 -1.05
NZO129SF1 f 4.28 0.978   3 0.565 0.228 3.48, 5.37 0.88
NZO129SF1 m 2.54 0.634   2   0.448 0.25 2.09, 2.99 1.7
NZOAF1 f 8.86 2.69   3 1.55 0.304 5.83, 11.0 2.5
NZOB6F1 f 4.98 0.605   8 0.214 0.122 3.79, 5.73 1.12
NZOB6F1 m 3.75 0.0   1   0.0 0.0 3.75, 3.75 3.22
NZO/HlLtJ f 7.4 1.55   4 0.775 0.209 5.8, 9.34 1.98
NZO/HlLtJ m 0.895 1.55   3 0.895 1.73 -0.37
NZONODF1 f 12.5 4.15   4 2.07 0.332 7.02, 16.8 3.79
NZONODF1 m 1.25 1.63   2   1.15 1.31 0.095, 2.4 0.07
NZOWSBF1 f 7.03 0.0   1   0.0 0.0 7.03, 7.03 1.85
NZOWSBF1 m 2.33 0.0   1   0.0 0.0 2.33, 2.33 1.43
PWK129SF1 f 1.35 1.92   4 0.959 1.42 -0.17
PWKAF1 f 0.975 0.0   1   0.0 0.0 0.975, 0.975 -0.3
PWKAF1 m 1.1 0.0   1   0.0 0.0 1.1, 1.1 -0.12
PWKB6F1 f 0.624 0.0   1   0.0 0.0 0.624, 0.624 -0.42
PWKB6F1 m 1.13 0.245   2   0.173 0.218 0.954, 1.3 -0.08
PWKNODF1 m 1.5 0.00283   2   0.002 0.00189 1.49, 1.5 0.39
PWK/PhJ f 0.059 0.0225   4 0.0113 0.382 0.04, 0.09 -0.62
PWK/PhJ m 0.762 0.298   6 0.122 0.392 0.419, 1.23 -0.54
WSB129SF1 f 0.352 0.161   4 0.0806 0.458 0.188, 0.54 -0.52
WSB129SF1 m 0.244 0.115   5 0.0516 0.472 0.074, 0.359 -1.19
WSB/EiJ f 0.186 0.0806   5 0.0361 0.433 0.094, 0.298 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.4274 0.3808 1.182 0.0
129S1/SvImJ m 0.5083 0.3476 1.1972 0.0
129SAF1 f 2.0725 0.602 3.2656 0.8794
129SAF1 m 1.669 0.3808 2.4236 0.9144
129SPWKF1 f 0.241 0.4916 1.2151 0.0
129SPWKF1 m 0.6505 0.602 1.8436 0.0
129SWSBF1 f 0.0815 0.4257 0.9251 0.0
129SWSBF1 m 0.137 0.602 1.3301 0.0
ACASTF1 f 0.5933 0.4257 1.4369 0.0
ACASTF1 m 1.3345 0.4257 2.1781 0.4909
A/J f 0.287 0.602 1.4801 0.0
A/J m 0.355 0.4916 1.3291 0.0
APWKF1 f 0.4765 0.602 1.6696 0.0
APWKF1 m 1.3373 0.4916 2.3115 0.3632
B6CASTF1 f 0.1267 0.4257 0.9704 0.0
B6CASTF1 m 0.3905 0.602 1.5836 0.0
B6WSBF1 f 0.1532 0.301 0.7498 0.0
B6WSBF1 m 0.174 0.4916 1.1481 0.0
C57BL/6J f 0.6692 0.3808 1.4238 0.0
C57BL/6J m 1.4172 0.3808 2.1718 0.6626
CAST/EiJ f 0.2425 0.602 1.4356 0.0
CAST/EiJ m 0.2633 0.4916 1.2375 0.0
CASTNODF1 f 0.2477 0.4916 1.2218 0.0
CASTNODF1 m 0.9106 0.3808 1.6652 0.156
NODCASTF1 f 0.0587 0.3218 0.6964 0.0
NODCASTF1 m 0.942 0.602 2.1351 0.0
NODPWKF1 f 0.2045 0.602 1.3976 0.0
NODPWKF1 m 0.9096 0.301 1.5062 0.3131
NODWSBF1 f 0.2934 0.3808 1.048 0.0
NODWSBF1 m 0.3555 0.602 1.5486 0.0
NZO129SF1 f 4.2847 0.4916 5.2588 3.3105
NZO129SF1 m 2.538 0.602 3.7311 1.3449
NZO/HlLtJ f 7.402 0.4257 8.2456 6.5584
NZO/HlLtJ m 0.8953 0.4916 1.8695 0.0
NZONODF1 f 12.475 0.4257 13.3186 11.6314
NZONODF1 m 1.2485 0.602 2.4416 0.0554
PWK/PhJ f 0.059 0.4257 0.9026 0.0
PWK/PhJ m 0.7623 0.3476 1.4512 0.0735
WSB129SF1 f 0.3518 0.4257 1.1954 0.0
WSB129SF1 m 0.2444 0.3808 0.999 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.4679 0.2578 0.9787 0.0
129SAF1 both 1.8707 0.3562 2.5766 1.1649
129SPWKF1 both 0.4458 0.3886 1.2159 0.0
129SWSBF1 both 0.1092 0.3687 0.8399 0.0
ACASTF1 both 0.9639 0.301 1.5604 0.3673
A/J both 0.321 0.3886 1.0911 0.0
APWKF1 both 0.9069 0.3886 1.677 0.1368
B6CASTF1 both 0.2586 0.3687 0.9892 0.0
B6WSBF1 both 0.1636 0.2882 0.7348 0.0
C57BL/6J both 1.0432 0.2692 1.5768 0.5096
CAST/EiJ both 0.2529 0.3886 1.023 0.0
CASTNODF1 both 0.5791 0.3109 1.1952 0.0
NODCASTF1 both 0.5004 0.3413 1.1768 0.0
NODPWKF1 both 0.5571 0.3365 1.224 0.0
NODWSBF1 both 0.3245 0.3562 1.0303 0.0
NZO129SF1 both 3.4113 0.3886 4.1815 2.6412
NZO/HlLtJ both 4.1487 0.3251 4.793 3.5043
NZONODF1 both 6.8618 0.3687 7.5924 6.1311
PWK/PhJ both 0.4107 0.2748 0.9552 0.0
WSB129SF1 both 0.2981 0.2856 0.864 0.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA