Phenotype measure:   Chesler2   urination_LD

ID, description, units MPD:43469   urination_LD   number of urine puddles, 10 min test   [n]
Data set, strains Chesler2   CC diallel w/par   39 strains     sex: both     age: 7-15wks
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Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - number of urine puddles, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 2.00 1.00 1.33 1.00 0.750
A ♀
B6 ♀ 0.500 1.00
CAST ♀ 1.00 1.00 1.40 1.00
NOD ♀ 1.00 0.800
NZO ♀ 1.50 0.667 0.333
PWK ♀ 0.500 1.00 2.00
WSB ♀ 0.667 0.500 2.00

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 1.00 0.500 1.00 0.500 1.00
A ♀ 1.00 2.00 0.600
B6 ♀ 0.500 1.00
CAST ♀ 1.00 1.00 0.667 0.667 1.00
NOD ♀ 1.00 0.500 0.333
NZO ♀ 1.00 2.00 1.50
PWK ♀ 0.500 0.500 0.500
WSB ♀ 0.500 0.500 0.500

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested39 strains39 strains
Mean of the strain means0.588   n 0.584   n
Median of the strain means0.500   n 0.500   n
SD of the strain means± 0.637 ± 0.534
Coefficient of variation (CV)1.08 0.914
Min–max range of strain means0   –   2.00   n 0   –   2.00   n
Mean sample size per strain2.1   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0878 0.0878 0.2149 0.6454
strain 9 7.1923 0.7991 1.9552 0.0698
sex:strain 9 4.2629 0.4737 1.1588 0.3455
Residuals 42 17.1667 0.4087


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 2.22
129SAF1 f 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.65
129SAF1 m 1.0 0.0   3 0.0 0.0 1.0, 1.0 0.78
129SB6F1 f 1.33 1.15   3 0.667 0.866 1.16
129SB6F1 m 0.5 0.577   4 0.289 1.15 -0.16
129SCASTF1 f 1.0 1.41   2   1.0 1.41 0.65
129SCASTF1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.78
129SNODF1 f 0.0 0.0   1   0.0 0.0 -0.92
129SNODF1 m 0.5 0.707   2   0.5 1.41 -0.16
129SNZOF1 f 0.0 0.0   1   0.0 0.0 -0.92
129SNZOF1 m 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.78
129SPWKF1 f 0.75 0.957   4 0.479 1.28 0.25
129SPWKF1 m 0.0 0.0   1   0.0 0.0 -1.09
129SWSBF1 f 0.0 0.0   4 0.0 0.0 -0.92
129SWSBF1 m 0.0 0.0   2   0.0 0.0 -1.09
AB6F1 f 0.0 0.0   1   0.0 0.0 -0.92
AB6F1 m 1.0 1.0   3 0.577 1.0 0.78
ACASTF1 m 2.0 0.0   1   0.0 0.0 2.0, 2.0 2.65
ANODF1 m 0.6 0.548   5 0.245 0.913 0.03
ANZOF1 f 0.0 0.0   2   0.0 0.0 -0.92
APWKF1 m 0.0 0.0   1   0.0 0.0 -1.09
AWSBF1 m 0.0 0.0   1   0.0 0.0 -1.09
B6129SF1/J f 0.5 0.707   2   0.5 1.41 -0.14
B6AF1/J f 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.65
B6AF1/J m 0.5 0.707   2   0.5 1.41 -0.16
B6CASTF1 m 0.0 0.0   2   0.0 0.0 -1.09
B6NODF1 f 0.0 0.0   2   0.0 0.0 -0.92
B6NODF1 m 0.0 0.0   1   0.0 0.0 -1.09
B6NZOF1 f 0.0 0.0   3 0.0 0.0 -0.92
B6NZOF1 m 1.0 1.41   2   1.0 1.41 0.78
B6PWKF1 f 0.0 0.0   2   0.0 0.0 -0.92
CAST129SF1 m 1.0 0.0   3 0.0 0.0 1.0, 1.0 0.78
CASTAF1 f 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.65
CASTAF1 m 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.78
CASTB6F1 f 0.0 0.0   1   0.0 0.0 -0.92
CASTB6F1 m 0.0 0.0   3 0.0 0.0 -1.09
CASTNODF1 m 0.667 1.15   3 0.667 1.73 0.16
CASTNZOF1 f 1.0 0.0   3 0.0 0.0 1.0, 1.0 0.65
CASTNZOF1 m 0.0 0.0   1   0.0 0.0 -1.09
CASTPWKF1 f 1.4 0.548   5 0.245 0.391 1.0, 2.0 1.27
CASTPWKF1 m 0.667 0.516   6 0.211 0.775 0.16
CASTWSBF1 f 1.0 1.41   2   1.0 1.41 0.65
CASTWSBF1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.78
NOD129SF1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.78
NODAF1 f 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.65
NODAF1 m 0.0 0.0   1   0.0 0.0 -1.09
NODB6F1 f 0.0 0.0   1   0.0 0.0 -0.92
NODB6F1 m 0.0 0.0   1   0.0 0.0 -1.09
NODCASTF1 f 0.8 0.837   5 0.374 1.05 0.33
NODCASTF1 m 0.5 0.707   2   0.5 1.41 -0.16
NODNZOF1 f 0.0 0.0   2   0.0 0.0 -0.92
NODNZOF1 m 0.333 0.577   3 0.333 1.73 -0.47
NODPWKF1 f 0.0 0.0   1   0.0 0.0 -0.92
NZO129SF1 f 1.5 0.707   2   0.5 0.471 1.0, 2.0 1.43
NZO129SF1 m 1.0 0.0   1   0.0 0.0 1.0, 1.0 0.78
NZOAF1 f 0.667 0.577   3 0.333 0.866 0.12
NZOB6F1 m 2.0 0.0   1   0.0 0.0 2.0, 2.0 2.65
NZONODF1 f 0.0 0.0   1   0.0 0.0 -0.92
NZONODF1 m 1.5 0.707   2   0.5 0.471 1.0, 2.0 1.72
NZOWSBF1 f 0.333 0.577   3 0.333 1.73 -0.4
PWK129SF1 f 0.5 0.577   4 0.289 1.15 -0.14
PWKAF1 f 1.0 0.0   2   0.0 0.0 1.0, 1.0 0.65
PWKAF1 m 0.5 0.707   2   0.5 1.41 -0.16
PWKB6F1 m 0.5 0.707   2   0.5 1.41 -0.16
PWKNODF1 f 2.0 0.0   1   0.0 0.0 2.0, 2.0 2.22
PWKNODF1 m 0.5 0.707   2   0.5 1.41 -0.16
WSB129SF1 f 0.667 1.15   3 0.667 1.73 0.12
WSBAF1 f 0.0 0.0   1   0.0 0.0 -0.92
WSBAF1 m 0.0 0.0   2   0.0 0.0 -1.09
WSBB6F1 f 0.0 0.0   2   0.0 0.0 -0.92
WSBB6F1 m 0.5 0.707   2   0.5 1.41 -0.16
WSBCASTF1 m 0.0 0.0   3 0.0 0.0 -1.09
WSB/EiJ f 0.0 0.0   2   0.0 0.0 -0.92
WSBNODF1 f 0.0 0.0   1   0.0 0.0 -0.92
WSBNODF1 m 0.5 0.707   2   0.5 1.41 -0.16
WSBNZOF1 f 0.5 0.837   6 0.342 1.67 -0.14
WSBNZOF1 m 0.5 0.707   2   0.5 1.41 -0.16
WSBPWKF1 f 2.0 0.0   2   0.0 0.0 2.0, 2.0 2.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 1.0 0.4521 1.9123 0.0877
129SAF1 m 1.0 0.3691 1.7449 0.2551
129SB6F1 f 1.3333 0.3691 2.0782 0.5884
129SB6F1 m 0.5 0.3197 1.1451 -0.1451
129SWSBF1 f 0.0 0.3197 0.6451 -0.6451
129SWSBF1 m 0.0 0.4521 0.9123 -0.9123
B6NZOF1 f 0.0 0.3691 0.7449 -0.7449
B6NZOF1 m 1.0 0.4521 1.9123 0.0877
CASTPWKF1 f 1.4 0.2859 1.977 0.823
CASTPWKF1 m 0.6667 0.261 1.1934 0.1399
NODCASTF1 f 0.8 0.2859 1.377 0.223
NODCASTF1 m 0.5 0.4521 1.4123 -0.4123
NODNZOF1 f 0.0 0.4521 0.9123 -0.9123
NODNZOF1 m 0.3333 0.3691 1.0782 -0.4116
PWKAF1 f 1.0 0.4521 1.9123 0.0877
PWKAF1 m 0.5 0.4521 1.4123 -0.4123
WSBB6F1 f 0.0 0.4521 0.9123 -0.9123
WSBB6F1 m 0.5 0.4521 1.4123 -0.4123
WSBNZOF1 f 0.5 0.261 1.0267 -0.0267
WSBNZOF1 m 0.5 0.4521 1.4123 -0.4123


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 1.0 0.2918 1.5889 0.4111
129SB6F1 both 0.9167 0.2441 1.4094 0.424
129SWSBF1 both 0.0 0.2768 0.5587 -0.5587
B6NZOF1 both 0.5 0.2918 1.0889 -0.0889
CASTPWKF1 both 1.0333 0.1936 1.424 0.6427
NODCASTF1 both 0.65 0.2674 1.1897 0.1103
NODNZOF1 both 0.1667 0.2918 0.7556 -0.4222
PWKAF1 both 0.75 0.3197 1.3951 0.1049
WSBB6F1 both 0.25 0.3197 0.8951 -0.3951
WSBNZOF1 both 0.5 0.261 1.0267 -0.0267




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA