Phenotype measure:   Chesler2   transitions_LD


  STRAIN COMPARISON PLOT
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Chesler2 - number of transitions between light and dark compartments, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 21.0 9.50 12.0 20.0 21.0 16.0 14.2 14.8
A ♀ 26.0 9.50
B6 ♀ 17.0 12.0 21.5 13.7 12.0
CAST ♀ 22.0 17.3 14.8 6.00
NOD ♀ 2.00 24.0 22.2 20.0 17.0
NZO ♀ 15.0 6.00 15.0 12.0
PWK ♀ 10.5 9.00 11.0
WSB ♀ 22.0 14.0 15.0 21.0 16.8 13.5 12.5

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 11.7 30.5 9.00 11.5 7.00 21.0 17.5
A ♀ 14.0 3.00 12.4 11.0 13.0
B6 ♀ 14.5 24.0 19.0 10.5
CAST ♀ 14.3 16.5 17.7 17.3 12.0 16.2 16.0
NOD ♀ 21.0 28.0 23.0 20.5 20.7
NZO ♀ 17.0 15.0 18.5
PWK ♀ 6.00 10.0 19.5
WSB ♀ 7.50 13.7 13.7 15.5 9.00

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains39 strains
Mean of the strain means15.2   n 15.3   n
Median of the strain means14.9   n 15.0   n
SD of the strain means± 5.40 ± 5.82
Coefficient of variation (CV)0.355 0.379
Min–max range of strain means2.00   –   26.0   n 3.00   –   30.5   n
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 50.0083 50.0083 0.8308 0.3681
strain 7 792.9654 113.2808 1.882 0.1015
sex:strain 7 666.9198 95.2743 1.5828 0.1721
Residuals 36 2166.9333 60.1926


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 21.0 0.0   1   0.0 0.0 21.0, 21.0 1.07
129SAF1 f 9.5 4.95   2   3.5 0.521 6.0, 13.0 -1.06
129SAF1 m 11.7 7.51   3 4.33 0.643 4.0, 19.0 -0.63
129SB6F1 f 12.0 7.21   3 4.16 0.601 4.0, 18.0 -0.6
129SB6F1 m 30.5 20.1   4 10.1 0.659 15.0, 60.0 2.6
129SCASTF1 f 20.0 5.66   2   4.0 0.283 16.0, 24.0 0.88
129SCASTF1 m 9.0 0.0   1   0.0 0.0 9.0, 9.0 -1.09
129SNODF1 f 21.0 0.0   1   0.0 0.0 21.0, 21.0 1.07
129SNODF1 m 11.5 2.12   2   1.5 0.184 10.0, 13.0 -0.66
129SNZOF1 f 16.0 0.0   1   0.0 0.0 16.0, 16.0 0.14
129SNZOF1 m 7.0 1.41   2   1.0 0.202 6.0, 8.0 -1.43
129SPWKF1 f 14.2 3.1   4 1.55 0.217 10.0, 17.0 -0.19
129SPWKF1 m 21.0 0.0   1   0.0 0.0 21.0, 21.0 0.97
129SWSBF1 f 14.8 3.1   4 1.55 0.21 12.0, 19.0 -0.08
129SWSBF1 m 17.5 0.707   2   0.5 0.0404 17.0, 18.0 0.37
AB6F1 f 26.0 0.0   1   0.0 0.0 26.0, 26.0 1.99
AB6F1 m 14.0 3.0   3 1.73 0.214 11.0, 17.0 -0.23
ACASTF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -2.12
ANODF1 m 12.4 8.2   5 3.67 0.662 4.0, 24.0 -0.5
ANZOF1 f 9.5 4.95   2   3.5 0.521 6.0, 13.0 -1.06
APWKF1 m 11.0 0.0   1   0.0 0.0 11.0, 11.0 -0.75
AWSBF1 m 13.0 0.0   1   0.0 0.0 13.0, 13.0 -0.4
B6129SF1/J f 17.0 1.41   2   1.0 0.0832 16.0, 18.0 0.33
B6AF1/J f 12.0 0.0   1   0.0 0.0 12.0, 12.0 -0.6
B6AF1/J m 14.5 0.707   2   0.5 0.0488 14.0, 15.0 -0.14
B6CASTF1 m 24.0 1.41   2   1.0 0.0589 23.0, 25.0 1.49
B6NODF1 f 21.5 3.54   2   2.5 0.164 19.0, 24.0 1.16
B6NODF1 m 19.0 0.0   1   0.0 0.0 19.0, 19.0 0.63
B6NZOF1 f 13.7 7.09   3 4.1 0.519 6.0, 20.0 -0.28
B6NZOF1 m 10.5 6.36   2   4.5 0.606 6.0, 15.0 -0.83
B6PWKF1 f 12.0 2.83   2   2.0 0.236 10.0, 14.0 -0.6
CAST129SF1 m 14.3 4.04   3 2.33 0.282 10.0, 18.0 -0.18
CASTAF1 m 16.5 2.12   2   1.5 0.129 15.0, 18.0 0.2
CASTB6F1 f 22.0 0.0   1   0.0 0.0 22.0, 22.0 1.25
CASTB6F1 m 17.7 1.53   3 0.882 0.0865 16.0, 19.0 0.41
CASTNODF1 m 17.3 2.08   3 1.2 0.12 15.0, 19.0 0.34
CASTNZOF1 f 17.3 8.33   3 4.81 0.48 8.0, 24.0 0.38
CASTNZOF1 m 12.0 0.0   1   0.0 0.0 12.0, 12.0 -0.57
CASTPWKF1 f 14.8 2.63   4 1.31 0.178 11.0, 17.0 -0.08
CASTPWKF1 m 16.2 4.32   5 1.93 0.267 12.0, 23.0 0.15
CASTWSBF1 f 6.0 0.0   1   0.0 0.0 6.0, 6.0 -1.71
CASTWSBF1 m 16.0 0.0   1   0.0 0.0 16.0, 16.0 0.11
NOD129SF1 m 21.0 0.0   1   0.0 0.0 21.0, 21.0 0.97
NODAF1 f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -2.45
NODAF1 m 28.0 0.0   1   0.0 0.0 28.0, 28.0 2.18
NODB6F1 f 24.0 0.0   1   0.0 0.0 24.0, 24.0 1.62
NODB6F1 m 23.0 0.0   1   0.0 0.0 23.0, 23.0 1.32
NODCASTF1 f 22.2 9.04   5 4.04 0.407 8.0, 33.0 1.29
NODCASTF1 m 20.5 2.12   2   1.5 0.103 19.0, 22.0 0.89
NODNZOF1 f 20.0 2.83   2   2.0 0.141 18.0, 22.0 0.88
NODNZOF1 m 20.7 3.51   3 2.03 0.17 17.0, 24.0 0.92
NODPWKF1 f 17.0 0.0   1   0.0 0.0 17.0, 17.0 0.33
NZO129SF1 f 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.04
NZO129SF1 m 17.0 0.0   1   0.0 0.0 17.0, 17.0 0.29
NZOAF1 f 6.0 4.36   3 2.52 0.726 1.0, 9.0 -1.71
NZOB6F1 m 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.06
NZONODF1 f 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.04
NZONODF1 m 18.5 7.78   2   5.5 0.42 13.0, 24.0 0.54
NZOWSBF1 f 12.0 2.65   3 1.53 0.22 10.0, 15.0 -0.6
PWK129SF1 f 10.5 4.12   4 2.06 0.393 6.0, 14.0 -0.88
PWKAF1 f 9.0 0.0   1   0.0 0.0 9.0, 9.0 -1.15
PWKAF1 m 6.0 0.0   2   0.0 0.0 6.0, 6.0 -1.6
PWKB6F1 m 10.0 12.7   2   9.0 1.27 1.0, 19.0 -0.92
PWKNODF1 f 11.0 0.0   1   0.0 0.0 11.0, 11.0 -0.78
PWKNODF1 m 19.5 10.6   2   7.5 0.544 12.0, 27.0 0.71
WSB129SF1 f 22.0 2.0   3 1.15 0.0909 20.0, 24.0 1.25
WSBAF1 f 14.0 0.0   1   0.0 0.0 14.0, 14.0 -0.23
WSBAF1 m 7.5 9.19   2   6.5 1.23 1.0, 14.0 -1.35
WSBB6F1 f 15.0 0.0   1   0.0 0.0 15.0, 15.0 -0.04
WSBB6F1 m 13.7 2.31   3 1.33 0.169 11.0, 15.0 -0.28
WSBCASTF1 m 13.7 4.62   3 2.67 0.338 11.0, 19.0 -0.28
WSB/EiJ f 12.5 3.54   2   2.5 0.283 10.0, 15.0 -0.51
WSBNODF1 f 21.0 0.0   1   0.0 0.0 21.0, 21.0 1.07
WSBNODF1 m 15.5 2.12   2   1.5 0.137 14.0, 17.0 0.03
WSBNZOF1 f 16.8 3.19   6 1.3 0.189 13.0, 22.0 0.29
WSBNZOF1 m 9.0 5.66   2   4.0 0.629 5.0, 13.0 -1.09
WSBPWKF1 f 13.5 0.707   2   0.5 0.0524 13.0, 14.0 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 9.5 5.486 20.6261 0.0
129SAF1 m 11.6667 4.4793 20.7511 2.5822
129SB6F1 f 12.0 4.4793 21.0845 2.9155
129SB6F1 m 30.5 3.8792 38.3674 22.6326
129SWSBF1 f 14.75 3.8792 22.6174 6.8826
129SWSBF1 m 17.5 5.486 28.6261 6.3739
B6NZOF1 f 13.6667 4.4793 22.7511 4.5822
B6NZOF1 m 10.5 5.486 21.6261 0.0
CASTPWKF1 f 14.75 3.8792 22.6174 6.8826
CASTPWKF1 m 16.2 3.4697 23.2368 9.1632
NODCASTF1 f 22.2 3.4697 29.2368 15.1632
NODCASTF1 m 20.5 5.486 31.6261 9.3739
NODNZOF1 f 20.0 5.486 31.1261 8.8739
NODNZOF1 m 20.6667 4.4793 29.7511 11.5822
WSBNZOF1 f 16.8333 3.1673 23.257 10.4097
WSBNZOF1 m 9.0 5.486 20.1261 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 10.5833 3.5412 17.7652 3.4014
129SB6F1 both 21.25 2.9628 27.2588 15.2412
129SWSBF1 both 16.125 3.3595 22.9383 9.3117
B6NZOF1 both 12.0833 3.5412 19.2652 4.9014
CASTPWKF1 both 15.475 2.6022 20.7526 10.1974
NODCASTF1 both 21.35 3.2456 27.9323 14.7677
NODNZOF1 both 20.3333 3.5412 27.5152 13.1514
WSBNZOF1 both 12.9167 3.1673 19.3403 6.493




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA