Phenotype measure:   Chesler2   pct_light_LD

ID, description, units MPD:43465   pct_light_LD   percentage of time in light compartment, 10 min test   [%]
Data set, strains Chesler2   CC diallel w/par   39 strains     sex: both     age: 7-15wks
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  STRAIN COMPARISON PLOT
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Chesler2 - percentage of time in light compartment, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 48.8 18.1 24.5 44.9 40.6 34.6 33.9 42.0
A ♀ 43.9 31.2
B6 ♀ 29.8 41.5 46.2 25.3 44.6
CAST ♀ 42.5 42.6 46.7 52.4
NOD ♀ 14.1 35.3 36.7 36.4 45.1
NZO ♀ 43.1 14.8 28.8 46.6
PWK ♀ 23.5 39.6 41.1
WSB ♀ 52.8 49.8 48.9 45.2 37.4 44.5 18.4

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 29.2 37.5 30.0 23.6 26.8 44.1 38.0
A ♀ 28.5 21.9 21.6 33.4 36.2
B6 ♀ 32.0 48.5 26.4 28.3
CAST ♀ 39.6 26.8 44.6 46.3 28.8 38.0 30.7
NOD ♀ 43.6 31.5 52.3 39.0 45.6
NZO ♀ 42.4 47.4 35.3
PWK ♀ 27.1 29.8 37.0
WSB ♀ 39.2 42.9 45.7 40.7 33.1

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains39 strains
Mean of the strain means37.8   % 35.7   %
Median of the strain means41.3   % 36.2   %
SD of the strain means± 10.5 ± 8.05
Coefficient of variation (CV)0.278 0.225
Min–max range of strain means14.1   –   52.8   % 21.6   –   52.3   %
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23.7142 23.7142 0.2465 0.6226
strain 7 1845.5094 263.6442 2.7405 0.0218
sex:strain 7 729.6223 104.2318 1.0835 0.394
Residuals 36 3463.3024 96.2028


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 48.8 0.0   1   0.0 0.0 48.8, 48.8 1.05
129SAF1 f 18.1 12.7   2   8.98 0.702 9.1, 27.1 -1.87
129SAF1 m 29.2 18.0   3 10.4 0.618 10.9, 46.9 -0.81
129SB6F1 f 24.5 10.9   3 6.3 0.445 12.5, 33.8 -1.27
129SB6F1 m 37.5 7.28   4 3.64 0.194 27.4, 43.8 0.22
129SCASTF1 f 44.9 1.15   2   0.815 0.0257 44.1, 45.7 0.68
129SCASTF1 m 30.0 0.0   1   0.0 0.0 30.0, 30.0 -0.71
129SNODF1 f 40.6 0.0   1   0.0 0.0 40.6, 40.6 0.27
129SNODF1 m 23.6 0.834   2   0.59 0.0353 23.0, 24.2 -1.51
129SNZOF1 f 34.6 0.0   1   0.0 0.0 34.6, 34.6 -0.3
129SNZOF1 m 26.8 0.361   2   0.255 0.0135 26.5, 27.0 -1.11
129SPWKF1 f 33.9 10.1   4 5.06 0.298 23.4, 47.4 -0.37
129SPWKF1 m 44.1 0.0   1   0.0 0.0 44.1, 44.1 1.04
129SWSBF1 f 42.0 2.3   4 1.15 0.0548 39.2, 44.2 0.4
129SWSBF1 m 38.0 5.81   2   4.11 0.153 33.9, 42.1 0.28
AB6F1 f 43.9 0.0   1   0.0 0.0 43.9, 43.9 0.58
AB6F1 m 28.5 5.54   3 3.2 0.194 22.4, 33.2 -0.9
ACASTF1 m 21.9 0.0   1   0.0 0.0 21.9, 21.9 -1.72
ANODF1 m 21.6 10.7   5 4.79 0.496 7.45, 35.3 -1.76
ANZOF1 f 31.2 16.1   2   11.4 0.516 19.8, 42.5 -0.63
APWKF1 m 33.4 0.0   1   0.0 0.0 33.4, 33.4 -0.29
AWSBF1 m 36.2 0.0   1   0.0 0.0 36.2, 36.2 0.06
B6129SF1/J f 29.8 7.47   2   5.28 0.251 24.5, 35.1 -0.76
B6AF1/J f 41.5 0.0   1   0.0 0.0 41.5, 41.5 0.35
B6AF1/J m 32.0 2.1   2   1.48 0.0657 30.5, 33.5 -0.46
B6CASTF1 m 48.5 2.88   2   2.03 0.0593 46.5, 50.5 1.59
B6NODF1 f 46.2 1.54   2   1.09 0.0334 45.1, 47.3 0.8
B6NODF1 m 26.4 0.0   1   0.0 0.0 26.4, 26.4 -1.16
B6NZOF1 f 25.3 11.8   3 6.84 0.468 11.8, 34.0 -1.19
B6NZOF1 m 28.3 19.9   2   14.0 0.701 14.3, 42.4 -0.92
B6PWKF1 f 44.6 9.5   2   6.72 0.213 37.9, 51.3 0.65
CAST129SF1 m 39.6 14.0   3 8.08 0.354 23.5, 49.1 0.48
CASTAF1 m 26.8 7.96   2   5.63 0.297 21.2, 32.4 -1.11
CASTB6F1 f 42.5 0.0   1   0.0 0.0 42.5, 42.5 0.45
CASTB6F1 m 44.6 1.94   3 1.12 0.0434 42.6, 46.5 1.1
CASTNODF1 m 46.3 6.13   3 3.54 0.132 39.7, 51.9 1.31
CASTNZOF1 f 42.6 2.44   3 1.41 0.0571 40.6, 45.3 0.46
CASTNZOF1 m 28.8 0.0   1   0.0 0.0 28.8, 28.8 -0.86
CASTPWKF1 f 46.7 8.04   4 4.02 0.172 39.4, 57.8 0.85
CASTPWKF1 m 38.0 7.77   5 3.48 0.204 26.7, 46.3 0.28
CASTWSBF1 f 52.4 0.0   1   0.0 0.0 52.4, 52.4 1.39
CASTWSBF1 m 30.7 0.0   1   0.0 0.0 30.7, 30.7 -0.62
NOD129SF1 m 43.6 0.0   1   0.0 0.0 43.6, 43.6 0.98
NODAF1 f 14.1 0.0   1   0.0 0.0 14.1, 14.1 -2.26
NODAF1 m 31.5 0.0   1   0.0 0.0 31.5, 31.5 -0.53
NODB6F1 f 35.3 0.0   1   0.0 0.0 35.3, 35.3 -0.24
NODB6F1 m 52.3 0.0   1   0.0 0.0 52.3, 52.3 2.06
NODCASTF1 f 36.7 5.46   5 2.44 0.149 27.6, 41.9 -0.1
NODCASTF1 m 39.0 7.28   2   5.15 0.187 33.8, 44.1 0.41
NODNZOF1 f 36.4 4.46   2   3.16 0.122 33.3, 39.6 -0.13
NODNZOF1 m 45.6 3.22   3 1.86 0.0705 42.4, 48.9 1.23
NODPWKF1 f 45.1 0.0   1   0.0 0.0 45.1, 45.1 0.7
NZO129SF1 f 43.1 0.0   1   0.0 0.0 43.1, 43.1 0.51
NZO129SF1 m 42.4 0.0   1   0.0 0.0 42.4, 42.4 0.83
NZOAF1 f 14.8 12.1   3 7.0 0.817 1.4, 25.0 -2.19
NZOB6F1 m 47.4 0.0   1   0.0 0.0 47.4, 47.4 1.45
NZONODF1 f 28.8 0.0   1   0.0 0.0 28.8, 28.8 -0.86
NZONODF1 m 35.3 1.43   2   1.01 0.0404 34.3, 36.3 -0.05
NZOWSBF1 f 46.6 9.41   3 5.43 0.202 35.9, 53.6 0.84
PWK129SF1 f 23.5 15.1   4 7.54 0.643 10.9, 44.5 -1.36
PWKAF1 f 39.6 0.0   1   0.0 0.0 39.6, 39.6 0.17
PWKAF1 m 27.1 5.62   2   3.98 0.207 23.2, 31.1 -1.07
PWKB6F1 m 29.8 32.8   2   23.2 1.1 6.64, 53.0 -0.74
PWKNODF1 f 41.1 0.0   1   0.0 0.0 41.1, 41.1 0.31
PWKNODF1 m 37.0 3.28   2   2.32 0.0886 34.7, 39.3 0.16
WSB129SF1 f 52.8 3.62   3 2.09 0.0686 50.8, 57.0 1.43
WSBAF1 f 49.8 0.0   1   0.0 0.0 49.8, 49.8 1.14
WSBAF1 m 39.2 2.6   2   1.83 0.0662 37.4, 41.0 0.43
WSBB6F1 f 48.9 0.0   1   0.0 0.0 48.9, 48.9 1.06
WSBB6F1 m 42.9 3.99   3 2.31 0.0931 40.1, 47.5 0.89
WSBCASTF1 m 45.7 10.8   3 6.21 0.235 36.8, 57.7 1.24
WSB/EiJ f 18.4 13.3   2   9.41 0.723 8.99, 27.8 -1.85
WSBNODF1 f 45.2 0.0   1   0.0 0.0 45.2, 45.2 0.7
WSBNODF1 m 40.7 17.6   2   12.5 0.433 28.3, 53.2 0.62
WSBNZOF1 f 37.4 11.6   6 4.75 0.311 26.2, 58.7 -0.04
WSBNZOF1 m 33.1 14.3   2   10.1 0.434 22.9, 43.2 -0.33
WSBPWKF1 f 44.5 7.44   2   5.26 0.167 39.2, 49.8 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 18.08 6.9355 32.1459 4.0141
129SAF1 m 29.1667 5.6628 40.6514 17.6819
129SB6F1 f 24.5333 5.6628 36.0181 13.0486
129SB6F1 m 37.54 4.9042 47.4861 27.5939
129SWSBF1 f 42.0025 4.9042 51.9486 32.0564
129SWSBF1 m 38.005 6.9355 52.0709 23.9391
B6NZOF1 f 25.3 5.6628 36.7847 13.8153
B6NZOF1 m 28.32 6.9355 42.3859 14.2541
CASTPWKF1 f 46.6575 4.9042 56.6036 36.7114
CASTPWKF1 m 38.022 4.3864 46.918 29.126
NODCASTF1 f 36.722 4.3864 45.618 27.826
NODCASTF1 m 38.96 6.9355 53.0259 24.8941
NODNZOF1 f 36.425 6.9355 50.4909 22.3591
NODNZOF1 m 45.5933 5.6628 57.0781 34.1086
WSBNZOF1 f 37.415 4.0042 45.5359 29.2941
WSBNZOF1 m 33.055 6.9355 47.1209 18.9891


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 23.6233 4.4769 32.7028 14.5438
129SB6F1 both 31.0367 3.7456 38.6331 23.4402
129SWSBF1 both 40.0038 4.2471 48.6173 31.3902
B6NZOF1 both 26.81 4.4769 35.8895 17.7305
CASTPWKF1 both 42.3397 3.2898 49.0118 35.6677
NODCASTF1 both 37.841 4.1031 46.1625 29.5195
NODNZOF1 both 41.0092 4.4769 50.0887 31.9297
WSBNZOF1 both 35.235 4.0042 43.3559 27.1141




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA