Phenotype measure:   Chesler2   duration_light_LD

ID, description, units MPD:43463   duration_light_LD   time spent in light compartment, 10 min test   [s]
Data set, strains Chesler2   CC diallel w/par   39 strains     sex: both     age: 7-15wks
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  STRAIN COMPARISON PLOT
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Chesler2 - time spent in light compartment, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 4.88 1.81 2.45 4.49 4.07 3.46 3.39 4.20
A ♀ 4.39 3.12
B6 ♀ 2.98 4.16 4.62 2.53 4.46
CAST ♀ 4.25 4.26 4.67 5.24
NOD ♀ 1.41 3.53 3.67 3.65 4.51
NZO ♀ 4.32 1.48 2.88 4.66
PWK ♀ 2.35 3.96 4.11
WSB ♀ 5.29 4.98 4.89 4.52 3.74 4.46 1.84

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 2.92 3.75 3.00 2.36 2.67 4.41 3.80
A ♀ 2.85 2.19 2.16 3.34 3.62
B6 ♀ 3.20 4.86 2.64 2.83
CAST ♀ 3.96 2.68 4.46 4.63 2.88 3.80 3.07
NOD ♀ 4.36 3.15 5.23 3.90 4.56
NZO ♀ 4.24 4.74 3.53
PWK ♀ 2.71 2.98 3.70
WSB ♀ 3.93 4.29 4.58 4.08 3.31

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains39 strains
Mean of the strain means3.78   s 3.57   s
Median of the strain means4.13   s 3.62   s
SD of the strain means± 1.05 ± 0.806
Coefficient of variation (CV)0.278 0.226
Min–max range of strain means1.41   –   5.29   s 2.16   –   5.23   s
Mean sample size per strain2.0   mice 2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2332 0.2332 0.2422 0.6256
strain 7 18.4586 2.6369 2.739 0.0219
sex:strain 7 7.2971 1.0424 1.0828 0.3944
Residuals 36 34.6582 0.9627


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.88 0.0   1   0.0 0.0 4.88, 4.88 1.05
129SAF1 f 1.81 1.27   2   0.9 0.703 0.91, 2.71 -1.87
129SAF1 m 2.92 1.8   3 1.04 0.617 1.09, 4.69 -0.81
129SB6F1 f 2.45 1.09   3 0.63 0.445 1.25, 3.38 -1.27
129SB6F1 m 3.75 0.731   4 0.366 0.195 2.74, 4.38 0.22
129SCASTF1 f 4.49 0.113   2   0.08 0.0252 4.41, 4.57 0.67
129SCASTF1 m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.71
129SNODF1 f 4.07 0.0   1   0.0 0.0 4.07, 4.07 0.27
129SNODF1 m 2.36 0.0849   2   0.06 0.036 2.3, 2.42 -1.51
129SNZOF1 f 3.46 0.0   1   0.0 0.0 3.46, 3.46 -0.31
129SNZOF1 m 2.67 0.0354   2   0.025 0.0132 2.65, 2.7 -1.12
129SPWKF1 f 3.39 1.01   4 0.507 0.299 2.34, 4.74 -0.37
129SPWKF1 m 4.41 0.0   1   0.0 0.0 4.41, 4.41 1.04
129SWSBF1 f 4.2 0.229   4 0.115 0.0545 3.92, 4.42 0.4
129SWSBF1 m 3.8 0.58   2   0.41 0.153 3.39, 4.21 0.28
AB6F1 f 4.39 0.0   1   0.0 0.0 4.39, 4.39 0.58
AB6F1 m 2.85 0.553   3 0.32 0.194 2.24, 3.32 -0.9
ACASTF1 m 2.19 0.0   1   0.0 0.0 2.19, 2.19 -1.72
ANODF1 m 2.16 1.07   5 0.478 0.495 0.75, 3.53 -1.75
ANZOF1 f 3.12 1.61   2   1.13 0.515 1.98, 4.25 -0.63
APWKF1 m 3.34 0.0   1   0.0 0.0 3.34, 3.34 -0.29
AWSBF1 m 3.62 0.0   1   0.0 0.0 3.62, 3.62 0.06
B6129SF1/J f 2.98 0.75   2   0.53 0.252 2.45, 3.51 -0.76
B6AF1/J f 4.16 0.0   1   0.0 0.0 4.16, 4.16 0.36
B6AF1/J m 3.2 0.212   2   0.15 0.0663 3.05, 3.35 -0.46
B6CASTF1 m 4.86 0.29   2   0.205 0.0597 4.65, 5.06 1.6
B6NODF1 f 4.62 0.155   2   0.109 0.0335 4.51, 4.73 0.8
B6NODF1 m 2.64 0.0   1   0.0 0.0 2.64, 2.64 -1.16
B6NZOF1 f 2.53 1.19   3 0.684 0.468 1.18, 3.4 -1.19
B6NZOF1 m 2.83 1.98   2   1.4 0.7 1.43, 4.24 -0.92
B6PWKF1 f 4.46 0.948   2   0.67 0.212 3.79, 5.13 0.65
CAST129SF1 m 3.96 1.4   3 0.808 0.354 2.35, 4.91 0.48
CASTAF1 m 2.68 0.792   2   0.56 0.296 2.12, 3.24 -1.11
CASTB6F1 f 4.25 0.0   1   0.0 0.0 4.25, 4.25 0.45
CASTB6F1 m 4.46 0.195   3 0.113 0.0438 4.26, 4.65 1.1
CASTNODF1 m 4.63 0.616   3 0.356 0.133 3.97, 5.19 1.31
CASTNZOF1 f 4.26 0.241   3 0.139 0.0566 4.06, 4.53 0.46
CASTNZOF1 m 2.88 0.0   1   0.0 0.0 2.88, 2.88 -0.86
CASTPWKF1 f 4.67 0.803   4 0.401 0.172 3.94, 5.78 0.85
CASTPWKF1 m 3.8 0.778   5 0.348 0.205 2.67, 4.63 0.28
CASTWSBF1 f 5.24 0.0   1   0.0 0.0 5.24, 5.24 1.39
CASTWSBF1 m 3.07 0.0   1   0.0 0.0 3.07, 3.07 -0.62
NOD129SF1 m 4.36 0.0   1   0.0 0.0 4.36, 4.36 0.98
NODAF1 f 1.41 0.0   1   0.0 0.0 1.41, 1.41 -2.26
NODAF1 m 3.15 0.0   1   0.0 0.0 3.15, 3.15 -0.53
NODB6F1 f 3.53 0.0   1   0.0 0.0 3.53, 3.53 -0.24
NODB6F1 m 5.23 0.0   1   0.0 0.0 5.23, 5.23 2.05
NODCASTF1 f 3.67 0.547   5 0.245 0.149 2.76, 4.19 -0.11
NODCASTF1 m 3.9 0.728   2   0.515 0.187 3.38, 4.41 0.4
NODNZOF1 f 3.65 0.445   2   0.315 0.122 3.33, 3.96 -0.12
NODNZOF1 m 4.56 0.325   3 0.188 0.0713 4.24, 4.89 1.22
NODPWKF1 f 4.51 0.0   1   0.0 0.0 4.51, 4.51 0.69
NZO129SF1 f 4.32 0.0   1   0.0 0.0 4.32, 4.32 0.51
NZO129SF1 m 4.24 0.0   1   0.0 0.0 4.24, 4.24 0.83
NZOAF1 f 1.48 1.21   3 0.701 0.818 0.14, 2.5 -2.19
NZOB6F1 m 4.74 0.0   1   0.0 0.0 4.74, 4.74 1.45
NZONODF1 f 2.88 0.0   1   0.0 0.0 2.88, 2.88 -0.86
NZONODF1 m 3.53 0.141   2   0.1 0.0401 3.43, 3.63 -0.05
NZOWSBF1 f 4.66 0.939   3 0.542 0.202 3.59, 5.36 0.84
PWK129SF1 f 2.35 1.51   4 0.753 0.642 1.09, 4.45 -1.36
PWKAF1 f 3.96 0.0   1   0.0 0.0 3.96, 3.96 0.17
PWKAF1 m 2.71 0.559   2   0.395 0.206 2.32, 3.11 -1.07
PWKB6F1 m 2.98 3.28   2   2.32 1.1 0.66, 5.3 -0.74
PWKNODF1 f 4.11 0.0   1   0.0 0.0 4.11, 4.11 0.31
PWKNODF1 m 3.7 0.325   2   0.23 0.0879 3.47, 3.93 0.16
WSB129SF1 f 5.29 0.358   3 0.207 0.0677 5.08, 5.7 1.44
WSBAF1 f 4.98 0.0   1   0.0 0.0 4.98, 4.98 1.14
WSBAF1 m 3.93 0.262   2   0.185 0.0667 3.74, 4.11 0.44
WSBB6F1 f 4.89 0.0   1   0.0 0.0 4.89, 4.89 1.05
WSBB6F1 m 4.29 0.401   3 0.232 0.0936 4.01, 4.75 0.89
WSBCASTF1 m 4.58 1.08   3 0.621 0.235 3.68, 5.77 1.25
WSB/EiJ f 1.84 1.33   2   0.94 0.722 0.9, 2.78 -1.85
WSBNODF1 f 4.52 0.0   1   0.0 0.0 4.52, 4.52 0.7
WSBNODF1 m 4.08 1.76   2   1.25 0.432 2.83, 5.32 0.63
WSBNZOF1 f 3.74 1.16   6 0.475 0.311 2.62, 5.87 -0.04
WSBNZOF1 m 3.31 1.44   2   1.01 0.434 2.29, 4.32 -0.33
WSBPWKF1 f 4.46 0.742   2   0.525 0.167 3.93, 4.98 0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 1.81 0.6938 3.2171 0.4029
129SAF1 m 2.9167 0.5665 4.0656 1.7678
129SB6F1 f 2.4533 0.5665 3.6022 1.3044
129SB6F1 m 3.7525 0.4906 4.7475 2.7575
129SWSBF1 f 4.2 0.4906 5.195 3.205
129SWSBF1 m 3.8 0.6938 5.2071 2.3929
B6NZOF1 f 2.53 0.5665 3.6789 1.3811
B6NZOF1 m 2.8332 0.6938 4.2403 1.4261
CASTPWKF1 f 4.6675 0.4906 5.6625 3.6725
CASTPWKF1 m 3.802 0.4388 4.6919 2.9121
NODCASTF1 f 3.672 0.4388 4.5619 2.7821
NODCASTF1 m 3.895 0.6938 5.3021 2.4879
NODNZOF1 f 3.645 0.6938 5.0521 2.2379
NODNZOF1 m 4.56 0.5665 5.7089 3.4111
WSBNZOF1 f 3.7433 0.4006 4.5557 2.9309
WSBNZOF1 m 3.305 0.6938 4.7121 1.8979


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 2.3633 0.4478 3.2716 1.4551
129SB6F1 both 3.1029 0.3747 3.8628 2.343
129SWSBF1 both 4.0 0.4249 4.8617 3.1383
B6NZOF1 both 2.6816 0.4478 3.5899 1.7733
CASTPWKF1 both 4.2347 0.3291 4.9022 3.5673
NODCASTF1 both 3.7835 0.4105 4.616 2.951
NODNZOF1 both 4.1025 0.4478 5.0108 3.1942
WSBNZOF1 both 3.5242 0.4006 4.3366 2.7118




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA