Phenotype measure:   Chesler2   duration_periphery_OFT

ID, description, units MPD:43459   duration_periphery_OFT   time spent in periphery, 10 min test   [s]
Data set, strains Chesler2   CC diallel w/par   41 strains     sex: both     age: 7-15wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - time spent in periphery, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 3.20 3.41 6.11 7.40 4.67 3.40 6.17 6.84
A ♀ 6.60 7.07 8.49
B6 ♀ 5.50 5.60 2.29 4.80 6.64
CAST ♀ 8.13 5.03 7.35 7.42 7.54
NOD ♀ 6.23 7.53 5.32 7.78 5.56 5.29
NZO ♀ 5.84 7.93 2.96 5.85
PWK ♀ 2.52 7.41 5.52
WSB ♀ 5.30 8.97 5.82 6.43 5.79 7.99 7.07

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 4.81 3.26 3.70 5.08 4.47 6.76 7.87
A ♀ 5.45 8.58 4.92 7.42 6.31
B6 ♀ 4.83 5.50 1.91 5.72
CAST ♀ 7.47 7.98 6.66 5.68 6.73 8.24 7.05
NOD ♀ 5.30 4.36 4.83 5.97 3.32
NZO ♀ 5.90 5.37 7.88
PWK ♀ 5.71 4.97 6.55
WSB ♀ 6.47 6.29 7.40 3.76 6.11

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains39 strains
Mean of the strain means6.02   s 5.81   s
Median of the strain means6.11   s 5.72   s
SD of the strain means± 1.66 ± 1.51
Coefficient of variation (CV)0.275 0.260
Min–max range of strain means2.29   –   8.97   s 1.91   –   8.58   s
Mean sample size per strain2.1   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.4318 4.4318 1.6035 0.2118
strain 10 167.4018 16.7402 6.0569 < 0.0001
sex:strain 10 33.5541 3.3554 1.2141 0.3075
Residuals 46 127.1349 2.7638


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.2 0.0   1   0.0 0.0 3.2, 3.2 -1.7
129SAF1 f 3.41 4.48   2   3.16 1.31 0.24, 6.57 -1.57
129SAF1 m 4.81 2.86   3 1.65 0.595 2.72, 8.07 -0.66
129SB6F1 f 6.11 1.26   3 0.728 0.206 4.79, 7.3 0.06
129SB6F1 m 3.26 0.964   4 0.482 0.296 1.93, 3.99 -1.69
129SCASTF1 f 7.4 0.629   2   0.445 0.085 6.96, 7.85 0.83
129SCASTF1 m 3.7 0.0   1   0.0 0.0 3.7, 3.7 -1.4
129SNODF1 f 4.67 0.0   1   0.0 0.0 4.67, 4.67 -0.81
129SNODF1 m 5.08 0.933   2   0.66 0.184 4.42, 5.74 -0.48
129SNZOF1 f 3.4 0.0   1   0.0 0.0 3.4, 3.4 -1.58
129SNZOF1 m 4.47 3.4   3 1.96 0.76 0.55, 6.52 -0.89
129SPWKF1 f 6.17 1.11   4 0.557 0.181 4.57, 7.16 0.09
129SPWKF1 m 6.76 0.0   1   0.0 0.0 6.76, 6.76 0.63
129SWSBF1 f 6.84 1.21   4 0.605 0.177 5.14, 7.95 0.5
129SWSBF1 m 7.87 0.629   2   0.445 0.08 7.42, 8.31 1.37
AB6F1 f 6.6 0.0   1   0.0 0.0 6.6, 6.6 0.35
AB6F1 m 5.45 1.66   3 0.959 0.305 3.71, 7.02 -0.24
ACASTF1 m 8.58 0.0   1   0.0 0.0 8.58, 8.58 1.84
ANODF1 m 4.92 1.97   5 0.882 0.401 2.89, 7.51 -0.59
ANZOF1 f 7.07 0.651   2   0.46 0.092 6.61, 7.53 0.63
APWKF1 f 8.49 0.0   1   0.0 0.0 8.49, 8.49 1.49
APWKF1 m 7.42 0.0   1   0.0 0.0 7.42, 7.42 1.07
AWSBF1 m 6.31 0.0   1   0.0 0.0 6.31, 6.31 0.33
B6129SF1/J f 5.5 0.651   2   0.46 0.118 5.04, 5.96 -0.31
B6AF1/J f 5.6 0.0   1   0.0 0.0 5.6, 5.6 -0.25
B6AF1/J m 4.83 1.46   2   1.03 0.302 3.8, 5.86 -0.65
B6CASTF1 m 5.5 1.72   2   1.21 0.313 4.28, 6.71 -0.21
B6NODF1 f 2.29 2.54   2   1.79 1.11 0.5, 4.09 -2.25
B6NODF1 m 1.91 2.26   2   1.6 1.18 0.31, 3.51 -2.59
B6NZOF1 f 4.8 2.74   4 1.37 0.571 1.0, 7.51 -0.74
B6NZOF1 m 5.72 1.94   2   1.37 0.34 4.35, 7.1 -0.06
B6PWKF1 f 6.64 0.827   2   0.585 0.125 6.06, 7.23 0.37
CAST129SF1 m 7.47 0.843   3 0.487 0.113 6.5, 7.99 1.1
CASTAF1 f 8.13 0.0   1   0.0 0.0 8.13, 8.13 1.27
CASTAF1 m 7.98 1.24   2   0.875 0.155 7.11, 8.86 1.44
CASTB6F1 f 5.03 0.0   1   0.0 0.0 5.03, 5.03 -0.6
CASTB6F1 m 6.66 1.17   3 0.673 0.175 5.41, 7.72 0.56
CASTNODF1 m 5.68 0.639   3 0.369 0.112 4.95, 6.12 -0.09
CASTNZOF1 f 7.35 0.925   3 0.534 0.126 6.59, 8.38 0.8
CASTNZOF1 m 6.73 0.0   1   0.0 0.0 6.73, 6.73 0.61
CASTPWKF1 f 7.42 0.783   5 0.35 0.106 6.64, 8.4 0.85
CASTPWKF1 m 8.24 0.201   6 0.0821 0.0244 7.86, 8.41 1.61
CASTWSBF1 f 7.54 1.32   2   0.93 0.174 6.61, 8.47 0.92
CASTWSBF1 m 7.05 0.0   1   0.0 0.0 7.05, 7.05 0.82
NOD129SF1 f 6.23 0.0   1   0.0 0.0 6.23, 6.23 0.13
NOD129SF1 m 5.3 3.45   2   2.44 0.651 2.86, 7.74 -0.34
NODAF1 f 7.53 0.0   1   0.0 0.0 7.53, 7.53 0.91
NODAF1 m 4.36 0.0   1   0.0 0.0 4.36, 4.36 -0.96
NODB6F1 f 5.32 0.0   1   0.0 0.0 5.32, 5.32 -0.42
NODB6F1 m 4.83 0.573   2   0.405 0.119 4.42, 5.23 -0.65
NODCASTF1 f 7.78 0.627   5 0.281 0.0806 6.94, 8.42 1.06
NODCASTF1 m 5.97 0.658   2   0.465 0.11 5.51, 6.44 0.11
NODNZOF1 f 5.56 0.431   2   0.305 0.0775 5.26, 5.87 -0.28
NODNZOF1 m 3.32 2.72   3 1.57 0.819 0.44, 5.84 -1.65
NODPWKF1 f 5.29 0.0   1   0.0 0.0 5.29, 5.29 -0.44
NZO129SF1 f 5.84 0.141   2   0.1 0.0242 5.74, 5.94 -0.11
NZO129SF1 m 5.9 0.0   1   0.0 0.0 5.9, 5.9 0.06
NZOAF1 f 7.93 1.6   3 0.924 0.202 6.13, 9.2 1.15
NZOB6F1 m 5.37 0.0   1   0.0 0.0 5.37, 5.37 -0.29
NZONODF1 f 2.96 0.0   1   0.0 0.0 2.96, 2.96 -1.85
NZONODF1 m 7.88 0.587   2   0.415 0.0745 7.46, 8.29 1.37
NZOWSBF1 f 5.85 0.846   3 0.488 0.145 4.87, 6.34 -0.1
PWK129SF1 f 2.52 2.92   4 1.46 1.16 0.41, 6.83 -2.11
PWKAF1 f 7.41 0.24   2   0.17 0.0324 7.24, 7.58 0.84
PWKAF1 m 5.71 2.37   2   1.67 0.415 4.03, 7.38 -0.07
PWKB6F1 m 4.97 1.25   2   0.885 0.252 4.09, 5.86 -0.56
PWKNODF1 f 5.52 0.0   1   0.0 0.0 5.52, 5.52 -0.3
PWKNODF1 m 6.55 0.0919   2   0.065 0.014 6.49, 6.62 0.49
WSB129SF1 f 5.3 3.16   3 1.82 0.597 1.74, 7.78 -0.43
WSBAF1 f 8.97 0.0   1   0.0 0.0 8.97, 8.97 1.78
WSBAF1 m 6.47 0.346   2   0.245 0.0535 6.23, 6.72 0.44
WSBB6F1 f 5.82 0.325   2   0.23 0.0559 5.59, 6.05 -0.12
WSBB6F1 m 6.29 1.91   3 1.1 0.304 4.09, 7.58 0.32
WSBCASTF1 m 7.4 1.08   4 0.539 0.146 6.07, 8.69 1.05
WSB/EiJ f 7.07 0.17   2   0.12 0.024 6.95, 7.19 0.63
WSBNODF1 f 6.43 0.0   1   0.0 0.0 6.43, 6.43 0.25
WSBNODF1 m 3.76 4.47   2   3.16 1.19 0.6, 6.92 -1.36
WSBNZOF1 f 5.79 1.35   6 0.553 0.234 4.11, 7.82 -0.14
WSBNZOF1 m 6.11 0.46   2   0.325 0.0753 5.78, 6.43 0.2
WSBPWKF1 f 7.99 1.13   2   0.8 0.142 7.19, 8.79 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 3.405 1.1755 5.7712 1.0388
129SAF1 m 4.81 0.9598 6.742 2.878
129SB6F1 f 6.1133 0.9598 8.0454 4.1813
129SB6F1 m 3.2575 0.8312 4.9307 1.5843
129SWSBF1 f 6.8375 0.8312 8.5107 5.1643
129SWSBF1 m 7.865 1.1755 10.2312 5.4988
B6NODF1 f 2.295 1.1755 4.6612 0.0
B6NODF1 m 1.91 1.1755 4.2762 0.0
B6NZOF1 f 4.8 0.8312 6.4732 3.1268
B6NZOF1 m 5.725 1.1755 8.0912 3.3588
CASTPWKF1 f 7.416 0.7435 8.9125 5.9195
CASTPWKF1 m 8.24 0.6787 9.6062 6.8738
NODCASTF1 f 7.784 0.7435 9.2805 6.2875
NODCASTF1 m 5.975 1.1755 8.3412 3.6088
NODNZOF1 f 5.565 1.1755 7.9312 3.1988
NODNZOF1 m 3.3167 0.9598 5.2487 1.3846
PWKAF1 f 7.41 1.1755 9.7762 5.0438
PWKAF1 m 5.705 1.1755 8.0712 3.3388
WSBB6F1 f 5.82 1.1755 8.1862 3.4538
WSBB6F1 m 6.2867 0.9598 8.2187 4.3546
WSBNZOF1 f 5.785 0.6787 7.1512 4.4188
WSBNZOF1 m 6.105 1.1755 8.4712 3.7388


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 4.1075 0.7588 5.6349 2.5801
129SB6F1 both 4.6854 0.6349 5.9633 3.4075
129SWSBF1 both 7.3513 0.7199 8.8003 5.9022
B6NODF1 both 2.1025 0.8312 3.7757 0.4293
B6NZOF1 both 5.2625 0.7199 6.7115 3.8135
CASTPWKF1 both 7.828 0.5033 8.8412 6.8148
NODCASTF1 both 6.8795 0.6955 8.2794 5.4796
NODNZOF1 both 4.4408 0.7588 5.9682 2.9134
PWKAF1 both 6.5575 0.8312 8.2307 4.8843
WSBB6F1 both 6.0533 0.7588 7.5807 4.5259
WSBNZOF1 both 5.945 0.6787 7.3112 4.5788




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA