Phenotype measure:   Chesler2   latency_periphery_OFT

ID, description, units MPD:43458   latency_periphery_OFT   latency to reach periphery, 10 min test   [s]
Data set, strains Chesler2   CC diallel w/par   41 strains     sex: both     age: 7-15wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - latency to reach periphery, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 362 9.74 6.43 3.60 15.4 4.35 0.250
A ♀ 0.535
B6 ♀ 0.600 1.00 27.9 2.63 0.435
CAST ♀ 0.270 0.223 0.0350
NOD ♀ 0.130 5.34 0.200 6.94
NZO ♀ 0.435 9.96 74.3 16.4
PWK ♀ 27.6
WSB ♀ 0.443 3.73 6.83 0.135 0.535

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 5.18 3.72 3.27 16.6
A ♀ 11.1 3.19 0.0700
B6 ♀ 9.27 32.7 1.64
CAST ♀ 0.300 0.730
NOD ♀ 28.9 9.48 3.30 0.865 23.9
NZO ♀ 13.0 14.3
PWK ♀ 16.6 8.88 0.870
WSB ♀ 0.443 0.865 2.30

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains39 strains
Mean of the strain means14.4   s 5.42   s
Median of the strain means0.443   s 0.865   s
SD of the strain means± 57.1 ± 8.45
Coefficient of variation (CV)3.98 1.56
Min–max range of strain means0   –   362   s 0   –   32.7   s
Mean sample size per strain2.1   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 84.5008 84.5008 0.4616 0.5003
strain 10 3935.8441 393.5844 2.1503 0.0391
sex:strain 10 697.889 69.7889 0.3813 0.9486
Residuals 46 8419.8929 183.0412


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 362.0 0.0   1   0.0 0.0 362.0, 362.0 6.08
129SAF1 f 9.74 7.27   2   5.14 0.746 4.6, 14.9 -0.08
129SAF1 m 5.18 8.98   3 5.18 1.73 -0.03
129SB6F1 f 6.43 9.23   3 5.33 1.44 0.8, 17.1 -0.14
129SB6F1 m 3.72 4.33   4 2.17 1.17 -0.2
129SCASTF1 f 3.6 1.51   2   1.07 0.42 2.53, 4.67 -0.19
129SCASTF1 m 3.27 0.0   1   0.0 0.0 3.27, 3.27 -0.25
129SNODF1 f 0.0 0.0   1   0.0 0.0 -0.25
129SNODF1 m 0.0 0.0   2   0.0 0.0 -0.64
129SNZOF1 f 15.4 0.0   1   0.0 0.0 15.4, 15.4 0.02
129SNZOF1 m 16.6 14.8   3 8.53 0.891 1.93, 31.5 1.32
129SPWKF1 f 4.35 6.54   4 3.27 1.5 -0.18
129SPWKF1 m 0.0 0.0   1   0.0 0.0 -0.64
129SWSBF1 f 0.25 0.455   4 0.227 1.82 -0.25
129SWSBF1 m 0.0 0.0   2   0.0 0.0 -0.64
AB6F1 f 0.0 0.0   1   0.0 0.0 -0.25
AB6F1 m 11.1 18.6   3 10.7 1.66 0.67
ACASTF1 m 0.0 0.0   1   0.0 0.0 -0.64
ANODF1 m 3.19 4.22   5 1.89 1.33 -0.26
ANZOF1 f 0.535 0.757   2   0.535 1.41 -0.24
APWKF1 f 0.0 0.0   1   0.0 0.0 -0.25
APWKF1 m 0.07 0.0   1   0.0 0.0 0.07, 0.07 -0.63
AWSBF1 m 0.0 0.0   1   0.0 0.0 -0.64
B6129SF1/J f 0.6 0.849   2   0.6 1.41 -0.24
B6AF1/J f 1.0 0.0   1   0.0 0.0 1.0, 1.0 -0.23
B6AF1/J m 9.27 2.64   2   1.87 0.285 7.4, 11.1 0.46
B6CASTF1 m 0.0 0.0   2   0.0 0.0 -0.64
B6NODF1 f 27.9 39.5   2   27.9 1.41 0.24
B6NODF1 m 32.7 46.2   2   32.7 1.41 3.23
B6NZOF1 f 2.63 2.14   4 1.07 0.812 -0.21
B6NZOF1 m 1.64 2.31   2   1.63 1.41 -0.45
B6PWKF1 f 0.435 0.615   2   0.435 1.41 -0.24
CAST129SF1 m 0.0 0.0   3 0.0 0.0 -0.64
CASTAF1 f 0.0 0.0   1   0.0 0.0 -0.25
CASTAF1 m 0.3 0.424   2   0.3 1.41 -0.61
CASTB6F1 f 0.27 0.0   1   0.0 0.0 0.27, 0.27 -0.25
CASTB6F1 m 0.0 0.0   3 0.0 0.0 -0.64
CASTNODF1 m 0.0 0.0   3 0.0 0.0 -0.64
CASTNZOF1 f 0.223 0.387   3 0.223 1.73 -0.25
CASTNZOF1 m 0.73 0.0   1   0.0 0.0 0.73, 0.73 -0.56
CASTPWKF1 f 0.0 0.0   5 0.0 0.0 -0.25
CASTPWKF1 m 0.0 0.0   6 0.0 0.0 -0.64
CASTWSBF1 f 0.035 0.0495   2   0.035 1.41 -0.25
CASTWSBF1 m 0.0 0.0   1   0.0 0.0 -0.64
NOD129SF1 f 0.13 0.0   1   0.0 0.0 0.13, 0.13 -0.25
NOD129SF1 m 28.9 40.9   2   28.9 1.41 2.78
NODAF1 f 0.0 0.0   1   0.0 0.0 -0.25
NODAF1 m 9.48 0.0   1   0.0 0.0 9.48, 9.48 0.48
NODB6F1 f 5.34 0.0   1   0.0 0.0 5.34, 5.34 -0.16
NODB6F1 m 3.3 2.79   2   1.97 0.844 1.33, 5.27 -0.25
NODCASTF1 f 0.2 0.245   5 0.11 1.22 -0.25
NODCASTF1 m 0.865 0.474   2   0.335 0.548 0.53, 1.2 -0.54
NODNZOF1 f 6.94 9.43   2   6.67 1.36 0.27, 13.6 -0.13
NODNZOF1 m 23.9 39.5   3 22.8 1.66 2.19
NODPWKF1 f 0.0 0.0   1   0.0 0.0 -0.25
NZO129SF1 f 0.435 0.615   2   0.435 1.41 -0.24
NZO129SF1 m 13.0 0.0   1   0.0 0.0 13.0, 13.0 0.9
NZOAF1 f 9.96 10.7   3 6.2 1.08 -0.08
NZOB6F1 m 14.3 0.0   1   0.0 0.0 14.3, 14.3 1.05
NZONODF1 f 74.3 0.0   1   0.0 0.0 74.3, 74.3 1.05
NZONODF1 m 0.0 0.0   2   0.0 0.0 -0.64
NZOWSBF1 f 16.4 28.4   3 16.4 1.73 0.04
PWK129SF1 f 27.6 45.7   4 22.9 1.66 0.23
PWKAF1 f 0.0 0.0   2   0.0 0.0 -0.25
PWKAF1 m 16.6 21.3   2   15.1 1.29 1.47, 31.6 1.32
PWKB6F1 m 8.88 8.39   2   5.94 0.946 2.94, 14.8 0.41
PWKNODF1 f 0.0 0.0   1   0.0 0.0 -0.25
PWKNODF1 m 0.87 1.13   2   0.8 1.3 0.07, 1.67 -0.54
WSB129SF1 f 0.443 0.768   3 0.443 1.73 -0.24
WSBAF1 f 0.0 0.0   1   0.0 0.0 -0.25
WSBAF1 m 0.0 0.0   2   0.0 0.0 -0.64
WSBB6F1 f 3.73 4.15   2   2.94 1.11 0.8, 6.67 -0.19
WSBB6F1 m 0.443 0.768   3 0.443 1.73 -0.59
WSBCASTF1 m 0.0 0.0   4 0.0 0.0 -0.64
WSB/EiJ f 0.535 0.757   2   0.535 1.41 -0.24
WSBNODF1 f 0.0 0.0   1   0.0 0.0 -0.25
WSBNODF1 m 0.865 1.22   2   0.865 1.41 -0.54
WSBNZOF1 f 6.83 10.7   6 4.39 1.57 -0.13
WSBNZOF1 m 2.3 1.84   2   1.3 0.799 1.0, 3.6 -0.37
WSBPWKF1 f 0.135 0.191   2   0.135 1.41 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 9.74 9.5666 28.9966 -9.5166
129SAF1 m 5.1833 7.8111 20.9063 -10.5397
129SB6F1 f 6.4267 7.8111 22.1497 -9.2963
129SB6F1 m 3.7175 6.7646 17.334 -9.899
129SWSBF1 f 0.25 6.7646 13.8665 -13.3665
129SWSBF1 m 0.0 9.5666 19.2566 -19.2566
B6NODF1 f 27.935 9.5666 47.1916 8.6784
B6NODF1 m 32.665 9.5666 51.9216 13.4084
B6NZOF1 f 2.635 6.7646 16.2515 -10.9815
B6NZOF1 m 1.635 9.5666 20.8916 -17.6216
CASTPWKF1 f 0.0 6.0505 12.179 -12.179
CASTPWKF1 m 0.0 5.5233 11.1178 -11.1178
NODCASTF1 f 0.2 6.0505 12.379 -11.979
NODCASTF1 m 0.865 9.5666 20.1216 -18.3916
NODNZOF1 f 6.94 9.5666 26.1966 -12.3166
NODNZOF1 m 23.87 7.8111 39.593 8.147
PWKAF1 f 0.0 9.5666 19.2566 -19.2566
PWKAF1 m 16.55 9.5666 35.8066 -2.7066
WSBB6F1 f 3.735 9.5666 22.9916 -15.5216
WSBB6F1 m 0.4433 7.8111 16.1663 -15.2797
WSBNZOF1 f 6.8283 5.5233 17.9462 -4.2895
WSBNZOF1 m 2.3 9.5666 21.5566 -16.9566


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 7.4617 6.1752 19.8918 -4.9684
129SB6F1 both 5.0721 5.1666 15.4719 -5.3277
129SWSBF1 both 0.125 5.8583 11.9172 -11.6672
B6NODF1 both 30.3 6.7646 43.9165 16.6835
B6NZOF1 both 2.135 5.8583 13.9272 -9.6572
CASTPWKF1 both 0.0 4.0962 8.2452 -8.2452
NODCASTF1 both 0.5325 5.6597 11.9249 -10.8599
NODNZOF1 both 15.405 6.1752 27.8351 2.9749
PWKAF1 both 8.275 6.7646 21.8915 -5.3415
WSBB6F1 both 2.0892 6.1752 14.5193 -10.3409
WSBNZOF1 both 4.5642 5.5233 15.682 -6.5537




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA