Project measure / variable:   Chesler2   pct_center_OFT

ID, description, units MPD:43457   pct_center_OFT   percentage of time in center, 10 min test   [%]  
Data set, strains Chesler2   CC diallel w/par   50 strains     sex: both     age: 7-15wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Chesler2 - percentage of time in center, 10 min test



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 68.0 60.4 35.9 23.0 33.1 55.0 30.5 31.6
A ♀ — — 34.0 — — 26.7 15.1 —
B6 ♀ 36.9 40.1 — — 51.5 47.4 27.3 —
CAST ♀ — 18.7 44.6 — — 24.0 20.2 22.6
NOD ♀ 37.7 20.5 46.9 22.2 — 43.3 36.3 —
NZO ♀ 29.4 15.8 — — 68.9 — — 37.0
PWK ♀ 51.6 14.3 — — 38.7 — — —
WSB ♀ 43.2 8.58 41.8 — 35.7 37.6 14.4 25.5

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ — 48.1 64.2 55.8 37.0 29.9 25.2 21.3
A ♀ — — 38.9 11.5 44.5 — 21.9 28.3
B6 ♀ — 46.7 — 35.9 61.5 35.8 — —
CAST ♀ 25.3 20.2 28.0 — 34.0 32.7 13.5 23.1
NOD ♀ 47.0 47.0 47.6 32.5 — 42.0 — —
NZO ♀ 33.2 — 46.3 — 21.3 — — —
PWK ♀ — 36.1 37.1 — 30.6 — — —
WSB ♀ — 30.2 33.5 21.5 36.3 34.0 — —

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains39 strains
Mean of the strain means34.5   % 34.9   %
Median of the strain means35.7   % 34.0   %
SD of the strain means± 14.4 ± 12.0
Coefficient of variation (CV)0.418 0.346
Min–max range of strain means8.58   –   68.9   % 11.5   –   64.2   %
Mean sample size per strain2.1   mice 2.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 99.0501 99.0501 0.4931 0.4861
strain 10 11227.692 1122.7692 5.5897 < 0.0001
sex:strain 10 2802.4428 280.2443 1.3952 0.2127
Residuals 46 9239.6683 200.8624


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 68.0 0.0   1   0.0 0.0 68.0, 68.0 2.32
129SAF1 f 60.4 50.3   2   35.6 0.834 24.8, 95.9 1.79
129SAF1 m 48.1 25.4   3 14.6 0.527 19.3, 67.1 1.1
129SB6F1 f 35.9 8.29   3 4.79 0.231 27.0, 43.3 0.09
129SB6F1 m 64.2 7.71   4 3.86 0.12 60.1, 75.7 2.44
129SCASTF1 f 23.0 10.5   2   7.45 0.458 15.5, 30.4 -0.8
129SCASTF1 m 55.8 0.0   1   0.0 0.0 55.8, 55.8 1.74
129SNODF1 f 33.1 0.0   1   0.0 0.0 33.1, 33.1 -0.1
129SNODF1 m 37.0 7.33   2   5.18 0.198 31.8, 42.1 0.18
129SNZOF1 f 55.0 0.0   1   0.0 0.0 55.0, 55.0 1.42
129SNZOF1 m 29.9 9.93   3 5.73 0.332 18.5, 36.5 -0.41
129SPWKF1 f 30.5 2.72   4 1.36 0.0892 28.4, 34.5 -0.28
129SPWKF1 m 25.2 0.0   1   0.0 0.0 25.2, 25.2 -0.8
129SWSBF1 f 31.6 12.1   4 6.07 0.384 20.5, 48.6 -0.2
129SWSBF1 m 21.3 6.29   2   4.45 0.295 16.9, 25.8 -1.13
AB6F1 f 34.0 0.0   1   0.0 0.0 34.0, 34.0 -0.04
AB6F1 m 38.9 15.0   3 8.68 0.386 29.8, 56.3 0.34
ACASTF1 m 11.5 0.0   1   0.0 0.0 11.5, 11.5 -1.94
ANODF1 m 44.5 14.3   5 6.39 0.321 24.9, 59.5 0.8
ANZOF1 f 26.7 10.3   2   7.25 0.384 19.4, 33.9 -0.54
APWKF1 f 15.1 0.0   1   0.0 0.0 15.1, 15.1 -1.35
APWKF1 m 21.9 0.0   1   0.0 0.0 21.9, 21.9 -1.08
AWSBF1 m 28.3 0.0   1   0.0 0.0 28.3, 28.3 -0.54
B6129SF1/J f 36.9 3.46   2   2.44 0.0937 34.5, 39.3 0.16
B6AF1/J f 40.1 0.0   1   0.0 0.0 40.1, 40.1 0.39
B6AF1/J m 46.7 21.6   2   15.3 0.462 31.4, 62.0 0.98
B6CASTF1 m 35.9 12.9   2   9.13 0.36 26.7, 45.0 0.09
B6NODF1 f 51.5 1.3   2   0.92 0.0253 50.5, 52.4 1.18
B6NODF1 m 61.5 4.7   2   3.32 0.0763 58.2, 64.9 2.21
B6NZOF1 f 47.4 26.6   4 13.3 0.561 24.9, 84.0 0.89
B6NZOF1 m 35.8 9.58   2   6.78 0.268 29.0, 42.6 0.08
B6PWKF1 f 27.3 0.537   2   0.38 0.0197 26.9, 27.7 -0.5
CAST129SF1 m 25.3 8.46   3 4.88 0.334 20.1, 35.0 -0.79
CASTAF1 f 18.7 0.0   1   0.0 0.0 18.7, 18.7 -1.1
CASTAF1 m 20.2 12.4   2   8.74 0.613 11.4, 28.9 -1.22
CASTB6F1 f 44.6 0.0   1   0.0 0.0 44.6, 44.6 0.7
CASTB6F1 m 28.0 7.68   3 4.43 0.275 22.8, 36.8 -0.57
CASTNODF1 m 34.0 6.83   3 3.95 0.201 29.9, 41.9 -0.07
CASTNZOF1 f 24.0 9.61   3 5.55 0.401 12.9, 29.8 -0.73
CASTNZOF1 m 32.7 0.0   1   0.0 0.0 32.7, 32.7 -0.18
CASTPWKF1 f 20.2 6.31   5 2.82 0.313 10.3, 26.4 -0.99
CASTPWKF1 m 13.5 1.37   6 0.559 0.101 11.7, 14.9 -1.77
CASTWSBF1 f 22.6 10.3   2   7.28 0.456 15.3, 29.9 -0.83
CASTWSBF1 m 23.1 0.0   1   0.0 0.0 23.1, 23.1 -0.98
NOD129SF1 f 37.7 0.0   1   0.0 0.0 37.7, 37.7 0.22
NOD129SF1 m 47.0 34.5   2   24.4 0.735 22.6, 71.4 1.01
NODAF1 f 20.5 0.0   1   0.0 0.0 20.5, 20.5 -0.97
NODAF1 m 47.0 0.0   1   0.0 0.0 47.0, 47.0 1.01
NODB6F1 f 46.9 0.0   1   0.0 0.0 46.9, 46.9 0.86
NODB6F1 m 47.6 11.6   2   8.21 0.244 39.4, 55.8 1.06
NODCASTF1 f 22.2 6.26   5 2.8 0.282 15.8, 30.6 -0.85
NODCASTF1 m 32.5 6.75   2   4.77 0.208 27.7, 37.3 -0.2
NODNZOF1 f 43.3 5.83   2   4.12 0.135 39.2, 47.4 0.61
NODNZOF1 m 42.0 10.8   3 6.24 0.257 34.1, 54.3 0.59
NODPWKF1 f 36.3 0.0   1   0.0 0.0 36.3, 36.3 0.12
NZO129SF1 f 29.4 15.8   2   11.2 0.538 18.2, 40.6 -0.36
NZO129SF1 m 33.2 0.0   1   0.0 0.0 33.2, 33.2 -0.14
NZOAF1 f 15.8 8.02   3 4.63 0.507 7.96, 24.0 -1.3
NZOB6F1 m 46.3 0.0   1   0.0 0.0 46.3, 46.3 0.95
NZONODF1 f 68.9 0.0   1   0.0 0.0 68.9, 68.9 2.38
NZONODF1 m 21.3 5.87   2   4.15 0.276 17.1, 25.4 -1.13
NZOWSBF1 f 37.0 8.63   3 4.98 0.233 29.8, 46.6 0.17
PWK129SF1 f 51.6 33.5   4 16.8 0.65 21.0, 83.8 1.18
PWKAF1 f 14.3 2.2   2   1.56 0.153 12.8, 15.9 -1.4
PWKAF1 m 36.1 17.3   2   12.2 0.478 23.9, 48.3 0.1
PWKB6F1 m 37.1 9.55   2   6.75 0.258 30.3, 43.8 0.19
PWKNODF1 f 38.7 0.0   1   0.0 0.0 38.7, 38.7 0.29
PWKNODF1 m 30.6 6.37   2   4.51 0.208 26.1, 35.1 -0.35
WSB129SF1 f 43.2 29.2   3 16.9 0.676 22.2, 76.5 0.6
WSBAF1 f 8.58 0.0   1   0.0 0.0 8.58, 8.58 -1.8
WSBAF1 m 30.2 1.64   2   1.16 0.0542 29.1, 31.4 -0.39
WSBB6F1 f 41.8 3.29   2   2.32 0.0787 39.5, 44.1 0.5
WSBB6F1 m 33.5 18.1   3 10.5 0.542 21.8, 54.4 -0.11
WSBCASTF1 m 21.5 8.63   4 4.31 0.401 13.1, 32.4 -1.11
WSB/EiJ f 25.5 0.94   2   0.665 0.0369 24.8, 26.1 -0.63
WSBNODF1 f 35.7 0.0   1   0.0 0.0 35.7, 35.7 0.08
WSBNODF1 m 36.3 11.6   2   8.2 0.32 28.1, 44.5 0.12
WSBNZOF1 f 37.6 12.2   6 4.99 0.325 20.9, 50.8 0.21
WSBNZOF1 m 34.0 5.9   2   4.17 0.173 29.8, 38.2 -0.07
WSBPWKF1 f 14.4 3.21   2   2.27 0.223 12.1, 16.6 -1.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 f 60.35 10.0215 80.5223 40.1777
129SAF1 m 48.0933 8.1825 64.564 31.6227
129SB6F1 f 35.9433 8.1825 52.414 19.4727
129SB6F1 m 64.155 7.0863 78.419 49.891
129SWSBF1 f 31.6275 7.0863 45.8915 17.3635
129SWSBF1 m 21.335 10.0215 41.5073 1.1627
B6NODF1 f 51.46 10.0215 71.6323 31.2877
B6NODF1 m 61.54 10.0215 81.7123 41.3677
B6NZOF1 f 47.3925 7.0863 61.6565 33.1285
B6NZOF1 m 35.805 10.0215 55.9773 15.6327
CASTPWKF1 f 20.184 6.3382 32.9421 7.4259
CASTPWKF1 m 13.5033 5.7859 25.1498 1.8568
NODCASTF1 f 22.186 6.3382 34.9441 9.4279
NODCASTF1 m 32.505 10.0215 52.6773 12.3327
NODNZOF1 f 43.29 10.0215 63.4623 23.1177
NODNZOF1 m 41.99 8.1825 58.4606 25.5194
PWKAF1 f 14.345 10.0215 34.5173 0.0
PWKAF1 m 36.105 10.0215 56.2773 15.9327
WSBB6F1 f 41.795 10.0215 61.9673 21.6227
WSBB6F1 m 33.48 8.1825 49.9506 17.0094
WSBNZOF1 f 37.6317 5.7859 49.2782 25.9852
WSBNZOF1 m 34.01 10.0215 54.1823 13.8377


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129SAF1 both 54.2217 6.4689 67.2428 41.2005
129SB6F1 both 50.0492 5.4122 60.9435 39.1549
129SWSBF1 both 26.4812 6.1369 38.8342 14.1283
B6NODF1 both 56.5 7.0863 70.764 42.236
B6NZOF1 both 41.5988 6.1369 53.9517 29.2458
CASTPWKF1 both 16.8437 4.291 25.4809 8.2064
NODCASTF1 both 27.3455 5.9288 39.2796 15.4114
NODNZOF1 both 42.64 6.4689 55.6612 29.6188
PWKAF1 both 25.225 7.0863 39.489 10.961
WSBB6F1 both 37.6375 6.4689 50.6587 24.6163
WSBNZOF1 both 35.8208 5.7859 47.4673 24.1743




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA