Phenotype measure:   Chesler2   RBC

ID, description, units MPD:43421   RBC   red blood cell count (RBC; units per volume x 106)   [n/µL]
Data set, strains Chesler2   CC diallel w/par   38 strains     sex: both     age: 7-15wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Chesler2 - red blood cell count (RBC; units per volume x 106)



  8-WAY DIALLEL CROSS VIEW
Female animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 9.69 11.9 11.6 10.8 13.4
A ♀ 8.64 11.8 10.8
B6 ♀ 10.8 9.69 11.2 10.6 10.9 12.0
CAST ♀ 12.4 12.8 12.1 11.6 12.0 11.6
NOD ♀ 10.8 10.8 7.13 10.4
NZO ♀ 11.4 11.0 11.5
PWK ♀ 11.1 11.8 11.5 9.56
WSB ♀ 11.7 11.7 11.2 10.9 9.72 10.8 11.1

Male animals
129S ♂ A ♂ B6 ♂ CAST ♂ NOD ♂ NZO ♂ PWK ♂ WSB ♂
129S ♀ 9.72 11.7 11.6 11.3 11.2
A ♀ 8.93 10.3 9.76 12.5 11.7
B6 ♀ 10.6 11.3 10.4 11.3
CAST ♀ 11.9 12.2 12.3 13.1 11.5 10.4 12.9
NOD ♀ 8.33 10.6
NZO ♀ 11.4 3.91 10.7
PWK ♀ 11.9 10.8
WSB ♀ 11.5 11.6 12.4 11.1 8.95 12.2

Cell coloring is based on strain mean Z-scores.     High-end         Mid         Low-end           Mouse over the cells to see additional info.


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains34 strains
Mean of the strain means11.1   n/µL 10.9   n/µL
Median of the strain means11.1   n/µL 11.3   n/µL
SD of the strain means± 1.13 ± 1.67
Coefficient of variation (CV)0.102 0.152
Min–max range of strain means7.13   –   13.4   n/µL 3.91   –   13.1   n/µL
Mean sample size per strain1.9   mice 2.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.6596 1.6596 1.8423 0.1777
strain 10 176.9701 17.697 19.6457 < 0.0001
sex:strain 10 7.6477 0.7648 0.849 0.5831
Residuals 100 90.0808 0.9008


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.69 0.212   2   0.15 0.0219 9.54, 9.84 -1.21
129S1/SvImJ m 9.72 0.127   2   0.09 0.0131 9.63, 9.81 -0.73
129SAF1 f 11.9 0.0   1   0.0 0.0 11.9, 11.9 0.74
129SAF1 m 11.7 0.099   2   0.07 0.00847 11.6, 11.8 0.46
129SB6F1 f 11.6 0.544   2   0.385 0.047 11.2, 12.0 0.47
129SB6F1 m 11.6 0.127   2   0.09 0.011 11.5, 11.7 0.4
129SCASTF1 f 10.8 0.141   2   0.1 0.0132 10.7, 10.8 -0.23
129SNODF1 m 11.3 0.431   2   0.305 0.038 11.0, 11.7 0.22
129SNZOF1 m 11.2 0.297   2   0.21 0.0266 11.0, 11.4 0.16
129SPWKF1 f 13.4 0.0   1   0.0 0.0 13.4, 13.4 2.06
AB6F1 f 11.8 0.0   1   0.0 0.0 11.8, 11.8 0.65
AB6F1 m 10.3 0.399   4 0.2 0.0387 9.83, 10.8 -0.38
A/J f 8.64 0.403   2   0.285 0.0466 8.36, 8.93 -2.14
A/J m 8.93 0.877   6 0.358 0.0982 7.92, 10.3 -1.21
ANODF1 m 9.76 0.677   7 0.256 0.0694 8.7, 10.7 -0.71
ANZOF1 f 10.8 0.0   1   0.0 0.0 10.8, 10.8 -0.23
APWKF1 m 12.5 0.0   1   0.0 0.0 12.5, 12.5 0.94
AWSBF1 m 11.7 0.0   1   0.0 0.0 11.7, 11.7 0.46
B6129SF1/J f 10.8 0.255   2   0.18 0.0236 10.6, 10.9 -0.23
B6AF1/J f 9.69 0.0   1   0.0 0.0 9.69, 9.69 -1.21
B6AF1/J m 10.6 0.0   1   0.0 0.0 10.6, 10.6 -0.2
B6NODF1 f 10.6 0.0   1   0.0 0.0 10.6, 10.6 -0.41
B6NODF1 m 10.4 0.0141   2   0.01 0.00136 10.4, 10.4 -0.32
B6NZOF1 f 10.9 0.0   1   0.0 0.0 10.9, 10.9 -0.14
B6NZOF1 m 11.3 0.0   1   0.0 0.0 11.3, 11.3 0.22
B6PWKF1 f 12.0 0.0   1   0.0 0.0 12.0, 12.0 0.83
C57BL/6J f 11.2 0.61   20 0.136 0.0543 9.98, 12.2 0.12
C57BL/6J m 11.3 0.544   37 0.0894 0.048 9.92, 12.3 0.22
CAST129SF1 m 11.9 0.163   2   0.115 0.0136 11.8, 12.0 0.58
CASTAF1 f 12.4 0.0   1   0.0 0.0 12.4, 12.4 1.18
CASTAF1 m 12.2 0.361   2   0.255 0.0296 11.9, 12.4 0.76
CASTB6F1 f 12.8 0.0   1   0.0 0.0 12.8, 12.8 1.53
CASTB6F1 m 12.3 0.567   3 0.327 0.046 11.7, 12.8 0.82
CAST/EiJ f 12.1 0.441   5 0.197 0.0365 11.7, 12.8 0.92
CAST/EiJ m 13.1 0.0424   2   0.03 0.00325 13.0, 13.1 1.3
CASTNODF1 m 11.5 0.0   1   0.0 0.0 11.5, 11.5 0.34
CASTNZOF1 f 11.6 0.951   4 0.475 0.0816 10.6, 12.7 0.47
CASTNZOF1 m 10.4 0.0   1   0.0 0.0 10.4, 10.4 -0.32
CASTPWKF1 f 12.0 0.45   5 0.201 0.0376 11.3, 12.4 0.83
CASTPWKF1 m 12.9 0.367   6 0.15 0.0286 12.3, 13.2 1.18
CASTWSBF1 f 11.6 1.12   2   0.795 0.0973 10.8, 12.3 0.47
NODAF1 f 10.8 0.0   1   0.0 0.0 10.8, 10.8 -0.23
NODB6F1 f 10.8 0.172   3 0.0991 0.0159 10.7, 11.0 -0.23
NODNZOF1 f 10.4 0.134   2   0.095 0.0129 10.3, 10.5 -0.59
NODNZOF1 m 10.6 0.742   2   0.525 0.0703 10.0, 11.1 -0.2
NOD/ShiLtJ f 7.13 0.655   3 0.378 0.092 6.46, 7.77 -3.48
NOD/ShiLtJ m 8.33 0.165   3 0.095 0.0198 8.14, 8.43 -1.57
NZO129SF1 f 11.4 0.0   1   0.0 0.0 11.4, 11.4 0.3
NZOAF1 f 11.0 0.0   1   0.0 0.0 11.0, 11.0 -0.06
NZOB6F1 m 11.4 0.0   1   0.0 0.0 11.4, 11.4 0.28
NZO/HlLtJ m 10.7 0.0   1   0.0 0.0 10.7, 10.7 -0.14
NZONODF1 m 3.91 0.0   1   0.0 0.0 3.91, 3.91 -4.22
NZOWSBF1 f 11.5 0.286   3 0.165 0.0248 11.2, 11.7 0.39
PWK129SF1 f 11.1 0.0   1   0.0 0.0 11.1, 11.1 0.03
PWKAF1 f 11.8 0.0   1   0.0 0.0 11.8, 11.8 0.65
PWKAF1 m 11.9 0.0   1   0.0 0.0 11.9, 11.9 0.58
PWKNODF1 f 11.5 0.0   1   0.0 0.0 11.5, 11.5 0.39
PWK/PhJ f 9.56 0.537   2   0.38 0.0562 9.18, 9.94 -1.33
PWK/PhJ m 10.8 1.35   4 0.676 0.125 9.49, 12.1 -0.08
WSB129SF1 f 11.7 0.0   1   0.0 0.0 11.7, 11.7 0.56
WSBAF1 f 11.7 0.0   1   0.0 0.0 11.7, 11.7 0.56
WSBAF1 m 11.5 0.106   2   0.075 0.00925 11.4, 11.5 0.34
WSBB6F1 f 11.2 0.382   2   0.27 0.0342 10.9, 11.4 0.12
WSBB6F1 m 11.6 0.525   3 0.303 0.0454 11.2, 12.2 0.4
WSBCASTF1 m 12.4 0.976   3 0.563 0.0786 11.4, 13.4 0.88
WSB/EiJ f 11.1 0.29   2   0.205 0.0261 10.9, 11.3 0.03
WSB/EiJ m 12.2 0.0   1   0.0 0.0 12.2, 12.2 0.76
WSBNODF1 f 10.9 0.0   1   0.0 0.0 10.9, 10.9 -0.14
WSBNODF1 m 11.1 0.552   2   0.39 0.0496 10.7, 11.5 0.1
WSBNZOF1 f 9.72 2.1   6 0.858 0.216 5.91, 11.9 -1.19
WSBNZOF1 m 8.95 3.45   4 1.72 0.385 3.89, 11.5 -1.19
WSBPWKF1 f 10.8 1.02   2   0.72 0.0941 10.1, 11.5 -0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.69 0.6711 11.0215 8.3585
129S1/SvImJ m 9.72 0.6711 11.0515 8.3885
129SB6F1 f 11.575 0.6711 12.9065 10.2435
129SB6F1 m 11.58 0.6711 12.9115 10.2485
A/J f 8.645 0.6711 9.9765 7.3135
A/J m 8.9267 0.3875 9.6954 8.1579
C57BL/6J f 11.2405 0.2122 11.6616 10.8194
C57BL/6J m 11.317 0.156 11.6266 11.0075
CAST/EiJ f 12.074 0.4245 12.9161 11.2319
CAST/EiJ m 13.06 0.6711 14.3915 11.7285
CASTPWKF1 f 11.964 0.4245 12.8061 11.1219
CASTPWKF1 m 12.8517 0.3875 13.6204 12.0829
NODNZOF1 f 10.435 0.6711 11.7665 9.1035
NODNZOF1 m 10.555 0.6711 11.8865 9.2235
NOD/ShiLtJ f 7.1267 0.548 8.2138 6.0395
NOD/ShiLtJ m 8.33 0.548 9.4172 7.2428
PWK/PhJ f 9.56 0.6711 10.8915 8.2285
PWK/PhJ m 10.835 0.4746 11.7765 9.8935
WSBB6F1 f 11.18 0.6711 12.5115 9.8485
WSBB6F1 m 11.5733 0.548 12.6605 10.4862
WSBNZOF1 f 9.7167 0.3875 10.4854 8.9479
WSBNZOF1 m 8.9525 0.4746 9.894 8.011


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.705 0.4746 10.6465 8.7635
129SB6F1 both 11.5775 0.4746 12.519 10.636
A/J both 8.7858 0.3875 9.5546 8.0171
C57BL/6J both 11.2788 0.1317 11.5401 11.0175
CAST/EiJ both 12.567 0.397 13.3547 11.7793
CASTPWKF1 both 12.4078 0.2874 12.9779 11.8377
NODNZOF1 both 10.495 0.4746 11.4365 9.5535
NOD/ShiLtJ both 7.7283 0.3875 8.4971 6.9596
PWK/PhJ both 10.1975 0.411 11.0129 9.3821
WSBB6F1 both 11.3767 0.4332 12.2361 10.5172
WSBNZOF1 both 9.3346 0.3063 9.9423 8.7268




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.