Project measure / variable:   Donahue9   calcium

ID, description, units MPD:41802   calcium   calcium (serum Ca)   [mg/dL]  
Data set, strains Donahue9   B6.PWD consomic w/par   25 strains     sex: both     age: 11wks
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  STRAIN COMPARISON PLOT
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Donahue9 - calcium (serum Ca)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains25 strains
Mean of the strain means10.0   mg/dL 10.2   mg/dL
Median of the strain means9.95   mg/dL 9.91   mg/dL
SD of the strain means± 0.585 ± 0.694
Coefficient of variation (CV)0.0582 0.0681
Min–max range of strain means9.25   –   11.8   mg/dL 9.31   –   12.0   mg/dL
Mean sample size per strain8.3   mice 8.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.4002 3.4002 8.1621 0.0045
strain 22 130.1485 5.9158 14.2011 < 0.0001
sex:strain 22 24.8745 1.1307 2.7142 0.0001
Residuals 334 139.1367 0.4166


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 10.4 0.937   8 0.331 0.0902 8.7, 11.7 0.61
B6.PWD-Chr1 m 10.0 0.78   8 0.276 0.0778 8.7, 11.1 -0.27
B6.PWD-Chr10.1 f 9.5 0.267   8 0.0945 0.0281 9.1, 9.9 -0.93
B6.PWD-Chr10.1 m 9.8 0.553   8 0.195 0.0564 8.5, 10.2 -0.56
B6.PWD-Chr10.2 f 9.62 0.271   11 0.0818 0.0282 9.3, 10.2 -0.73
B6.PWD-Chr10.2 m 9.91 0.179   10 0.0567 0.0181 9.6, 10.2 -0.4
B6.PWD-Chr10.3 f 10.1 0.37   8 0.131 0.0368 9.4, 10.5 0.09
B6.PWD-Chr10.3 m 11.0 0.485   8 0.172 0.0441 10.1, 11.6 1.17
B6.PWD-Chr11.1 f 10.5 0.595   12 0.172 0.0569 9.4, 11.7 0.78
B6.PWD-Chr11.1 m 10.8 0.856   12 0.247 0.079 9.3, 12.0 0.88
B6.PWD-Chr11.2 f 9.33 0.542   10 0.171 0.0581 8.5, 10.2 -1.22
B6.PWD-Chr11.2 m 9.7 0.611   10 0.193 0.063 8.6, 10.7 -0.7
B6.PWD-Chr11.3 f 9.95 0.268   10 0.0847 0.0269 9.4, 10.2 -0.16
B6.PWD-Chr11.3 m 10.5 0.534   8 0.189 0.0511 9.8, 11.6 0.45
B6.PWD-Chr12 f 11.8 0.913   8 0.323 0.0777 10.5, 12.9 3.0
B6.PWD-Chr12 m 11.4 1.07   8 0.38 0.0942 10.3, 13.3 1.75
B6.PWD-Chr14 f 9.76 0.305   9 0.102 0.0312 9.4, 10.2 -0.49
B6.PWD-Chr14 m 9.81 0.564   9 0.188 0.0575 9.1, 10.9 -0.54
B6.PWD-Chr15 f 9.49 0.579   8 0.205 0.0611 8.3, 10.3 -0.95
B6.PWD-Chr15 m 9.55 0.548   8 0.194 0.0574 8.7, 10.1 -0.92
B6.PWD-Chr16 f 9.73 0.49   10 0.155 0.0504 8.8, 10.5 -0.54
B6.PWD-Chr16 m 10.5 0.756   6 0.309 0.072 9.3, 11.3 0.45
B6.PWD-Chr17 f 10.3 0.45   8 0.159 0.0435 9.4, 10.7 0.43
B6.PWD-Chr17 m 9.75 0.76   8 0.269 0.0779 8.8, 10.7 -0.63
B6.PWD-Chr18 f 9.25 0.312   8 0.11 0.0337 8.6, 9.6 -1.36
B6.PWD-Chr18 m 9.91 0.467   8 0.165 0.0471 9.4, 10.8 -0.4
B6.PWD-Chr19 f 9.53 0.399   8 0.141 0.0419 9.0, 10.3 -0.88
B6.PWD-Chr19 m 9.7 0.532   8 0.188 0.0548 9.0, 10.5 -0.7
B6.PWD-Chr3 m 9.67 1.19   9 0.397 0.123 7.7, 11.5 -0.75
B6.PWD-Chr5 f 9.86 0.719   8 0.254 0.0729 8.6, 10.8 -0.32
B6.PWD-Chr5 m 9.99 0.506   8 0.179 0.0506 9.2, 10.8 -0.28
B6.PWD-Chr6 f 10.4 0.558   8 0.197 0.0537 9.4, 11.3 0.61
B6.PWD-Chr6 m 11.0 0.328   8 0.116 0.0298 10.6, 11.6 1.17
B6.PWD-Chr9 f 9.78 0.885   4 0.442 0.0905 8.6, 10.7 -0.46
B6.PWD-Chr9 m 9.56 0.627   7 0.237 0.0656 8.6, 10.3 -0.9
B6.PWD-ChrX.1 f 10.3 1.18   5 0.527 0.115 9.2, 11.7 0.43
B6.PWD-ChrX.1 m 9.52 1.29   6 0.525 0.135 8.1, 11.3 -0.96
B6.PWD-ChrX.2 m 10.3 0.552   9 0.184 0.0536 9.3, 11.0 0.16
B6.PWD-ChrX.3 f 10.3 0.4   8 0.141 0.039 9.6, 10.7 0.43
B6.PWD-ChrX.3 m 11.0 0.444   8 0.157 0.0402 10.2, 11.5 1.17
B6.PWD-ChrY f 10.4 1.07   8 0.377 0.102 9.4, 12.2 0.61
B6.PWD-ChrY m 9.41 0.988   8 0.349 0.105 7.4, 10.4 -1.12
B6.PWD-mt f 11.0 0.786   8 0.278 0.0714 9.9, 12.0 1.63
B6.PWD-mt m 12.0 1.24   8 0.439 0.103 10.6, 14.3 2.61
C57BL/6J f 10.2 0.474   8 0.168 0.0466 9.5, 10.8 0.26
C57BL/6J m 10.6 0.417   8 0.148 0.0394 9.9, 11.0 0.59
PWD/PhJ f 9.56 0.507   8 0.179 0.053 9.2, 10.6 -0.83
PWD/PhJ m 9.31 0.267   9 0.0889 0.0286 8.9, 9.8 -1.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 10.3875 0.2282 10.8364 9.9386
B6.PWD-Chr1 m 10.025 0.2282 10.4739 9.5761
B6.PWD-Chr10.1 f 9.5 0.2282 9.9489 9.0511
B6.PWD-Chr10.1 m 9.8 0.2282 10.2489 9.3511
B6.PWD-Chr10.2 f 9.6182 0.1946 10.001 9.2354
B6.PWD-Chr10.2 m 9.91 0.2041 10.3115 9.5085
B6.PWD-Chr10.3 f 10.0625 0.2282 10.5114 9.6136
B6.PWD-Chr10.3 m 11.0125 0.2282 11.4614 10.5636
B6.PWD-Chr11.1 f 10.4583 0.1863 10.8248 10.0918
B6.PWD-Chr11.1 m 10.8333 0.1863 11.1998 10.4668
B6.PWD-Chr11.2 f 9.33 0.2041 9.7315 8.9285
B6.PWD-Chr11.2 m 9.7 0.2041 10.1015 9.2985
B6.PWD-Chr11.3 f 9.95 0.2041 10.3515 9.5485
B6.PWD-Chr11.3 m 10.4625 0.2282 10.9114 10.0136
B6.PWD-Chr12 f 11.75 0.2282 12.1989 11.3011
B6.PWD-Chr12 m 11.4125 0.2282 11.8614 10.9636
B6.PWD-Chr14 f 9.7556 0.2151 10.1788 9.3324
B6.PWD-Chr14 m 9.8111 0.2151 10.2343 9.3879
B6.PWD-Chr15 f 9.4875 0.2282 9.9364 9.0386
B6.PWD-Chr15 m 9.55 0.2282 9.9989 9.1011
B6.PWD-Chr16 f 9.73 0.2041 10.1315 9.3285
B6.PWD-Chr16 m 10.5 0.2635 11.0183 9.9817
B6.PWD-Chr17 f 10.325 0.2282 10.7739 9.8761
B6.PWD-Chr17 m 9.75 0.2282 10.1989 9.3011
B6.PWD-Chr18 f 9.25 0.2282 9.6989 8.8011
B6.PWD-Chr18 m 9.9125 0.2282 10.3614 9.4636
B6.PWD-Chr19 f 9.525 0.2282 9.9739 9.0761
B6.PWD-Chr19 m 9.7 0.2282 10.1489 9.2511
B6.PWD-Chr5 f 9.8625 0.2282 10.3114 9.4136
B6.PWD-Chr5 m 9.9875 0.2282 10.4364 9.5386
B6.PWD-Chr6 f 10.4 0.2282 10.8489 9.9511
B6.PWD-Chr6 m 11.025 0.2282 11.4739 10.5761
B6.PWD-Chr9 f 9.775 0.3227 10.4098 9.1402
B6.PWD-Chr9 m 9.5571 0.2439 10.037 9.0773
B6.PWD-ChrX.1 f 10.28 0.2886 10.8478 9.7122
B6.PWD-ChrX.1 m 9.5167 0.2635 10.035 8.9983
B6.PWD-ChrX.3 f 10.25 0.2282 10.6989 9.8011
B6.PWD-ChrX.3 m 11.05 0.2282 11.4989 10.6011
B6.PWD-ChrY f 10.4125 0.2282 10.8614 9.9636
B6.PWD-ChrY m 9.4125 0.2282 9.8614 8.9636
B6.PWD-mt f 11.0125 0.2282 11.4614 10.5636
B6.PWD-mt m 12.0375 0.2282 12.4864 11.5886
C57BL/6J f 10.175 0.2282 10.6239 9.7261
C57BL/6J m 10.6 0.2282 11.0489 10.1511
PWD/PhJ f 9.5625 0.2282 10.0114 9.1136
PWD/PhJ m 9.3111 0.2151 9.7343 8.8879


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 10.2063 0.1614 10.5237 9.8888
B6.PWD-Chr10.1 both 9.65 0.1614 9.9674 9.3326
B6.PWD-Chr10.2 both 9.7641 0.141 10.0415 9.4867
B6.PWD-Chr10.3 both 10.5375 0.1614 10.8549 10.2201
B6.PWD-Chr11.1 both 10.6458 0.1317 10.905 10.3867
B6.PWD-Chr11.2 both 9.515 0.1443 9.7989 9.2311
B6.PWD-Chr11.3 both 10.2063 0.1531 10.5074 9.9051
B6.PWD-Chr12 both 11.5813 0.1614 11.8987 11.2638
B6.PWD-Chr14 both 9.7833 0.1521 10.0826 9.4841
B6.PWD-Chr15 both 9.5188 0.1614 9.8362 9.2013
B6.PWD-Chr16 both 10.115 0.1666 10.4428 9.7872
B6.PWD-Chr17 both 10.0375 0.1614 10.3549 9.7201
B6.PWD-Chr18 both 9.5813 0.1614 9.8987 9.2638
B6.PWD-Chr19 both 9.6125 0.1614 9.9299 9.2951
B6.PWD-Chr5 both 9.925 0.1614 10.2424 9.6076
B6.PWD-Chr6 both 10.7125 0.1614 11.0299 10.3951
B6.PWD-Chr9 both 9.6661 0.2023 10.064 9.2682
B6.PWD-ChrX.1 both 9.8983 0.1954 10.2827 9.5139
B6.PWD-ChrX.3 both 10.65 0.1614 10.9674 10.3326
B6.PWD-ChrY both 9.9125 0.1614 10.2299 9.5951
B6.PWD-mt both 11.525 0.1614 11.8424 11.2076
C57BL/6J both 10.3875 0.1614 10.7049 10.0701
PWD/PhJ both 9.4368 0.1568 9.7453 9.1283




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA