Phenotype measure:   Berndt3   vitamin_D

ID, description, units MPD:40501   vitamin_D   serum vitamin D concentration   [ng/mL]
Data set, strains Berndt3   inbred   18 strains     sex: m     age: 11wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Berndt3 - serum vitamin D concentration



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested18 strains
Mean of the strain means17.7   ng/mL
Median of the strain means16.8   ng/mL
SD of the strain means± 2.93
Coefficient of variation (CV)0.165
Min–max range of strain means13.8   –   24.6   ng/mL
Mean sample size per strain4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 583.917 34.3481 5.3503 < 0.0001
Residuals 53 340.2492 6.4198


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 15.7 0.896   3 0.517 0.0572 15.1, 16.7 -0.69
AKR/J m 17.7 0.25   4 0.125 0.0141 17.4, 18.0 -0.01
BALB/cJ m 16.5 1.56   4 0.782 0.0948 14.9, 18.6 -0.42
BUB/BnJ m 19.5 3.25   4 1.63 0.167 15.4, 23.3 0.6
C3H/HeJ m 17.4 3.31   4 1.66 0.19 14.9, 22.3 -0.12
C57BL/10J m 13.8 1.04   4 0.518 0.0751 12.7, 15.2 -1.34
C57BL/6J m 24.6 2.62   4 1.31 0.106 22.6, 28.3 2.34
C57BLKS/J m 16.4 2.69   4 1.34 0.164 14.0, 20.1 -0.46
C57L/J m 16.2 1.47   4 0.736 0.0909 14.0, 17.1 -0.52
CBA/J m 17.0 1.74   4 0.872 0.103 14.6, 18.8 -0.25
DBA/2J m 14.9 1.42   4 0.71 0.0951 12.8, 15.7 -0.97
FVB/NJ m 21.9 2.96   4 1.48 0.135 17.7, 24.3 1.42
KK/HlJ m 16.4 3.72   4 1.86 0.226 10.9, 18.9 -0.46
LP/J m 21.6 4.48   4 2.24 0.207 16.8, 27.0 1.32
PL/J m 18.6 3.24   4 1.62 0.174 15.4, 22.6 0.29
RIIIS/J m 16.4 0.759   4 0.38 0.0462 15.4, 17.1 -0.46
SJL/J m 13.8 2.6   4 1.3 0.188 10.0, 15.5 -1.34
SWR/J m 20.9 2.43   4 1.22 0.116 18.8, 23.3 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 15.6667 1.4629 18.6008 12.7326
AKR/J m 17.725 1.2669 20.266 15.184
BALB/cJ m 16.5 1.2669 19.041 13.959
BUB/BnJ m 19.5 1.2669 22.041 16.959
C3H/HeJ m 17.425 1.2669 19.966 14.884
C57BL/10J m 13.8 1.2669 16.341 11.259
C57BL/6J m 24.6 1.2669 27.141 22.059
C57BLKS/J m 16.35 1.2669 18.891 13.809
C57L/J m 16.2 1.2669 18.741 13.659
CBA/J m 16.975 1.2669 19.516 14.434
DBA/2J m 14.925 1.2669 17.466 12.384
FVB/NJ m 21.925 1.2669 24.466 19.384
KK/HlJ m 16.425 1.2669 18.966 13.884
LP/J m 21.65 1.2669 24.191 19.109
PL/J m 18.65 1.2669 21.191 16.109
RIIIS/J m 16.45 1.2669 18.991 13.909
SJL/J m 13.825 1.2669 16.366 11.284
SWR/J m 20.95 1.2669 23.491 18.409




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.