Project measure / variable:   Jentsch1   revers_latency_trial

ID, description, units MPD:40310   revers_latency_trial   average latency to initiate trial, reversal phase   [s]  
Data set, strains Jentsch1   BXD w/par   53 strains     sex: m     age: 17wks
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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Jentsch1 - average latency to initiate trial, reversal phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested53 strains
Mean of the strain means49.4   s
Median of the strain means39.5   s
SD of the strain means± 32.9
Coefficient of variation (CV)0.667
Min–max range of strain means14.0   –   189   s
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 52 170424.9132 3277.4022 2.4085 < 0.0001
Residuals 123 167374.9263 1360.7718


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ m 90.3 58.4   5 26.1 0.646 49.2, 193.0 1.24
BXD102/RwwJ m 29.6 14.0   5 6.26 0.473 12.4, 46.7 -0.6
BXD12/TyJ m 26.9 9.76   2   6.9 0.363 20.0, 33.8 -0.68
BXD13/TyJ m 46.4 39.1   2   27.7 0.842 18.8, 74.1 -0.09
BXD14/TyJ m 40.0 8.56   2   6.05 0.214 33.9, 46.0 -0.28
BXD16/TyJ m 23.9 13.2   2   9.35 0.552 14.6, 33.3 -0.77
BXD18/TyJ m 14.0 8.27   2   5.85 0.589 8.2, 19.9 -1.07
BXD1/TyJ m 36.2 33.2   5 14.8 0.915 9.6, 76.0 -0.4
BXD22/TyJ m 30.9 6.51   2   4.6 0.211 26.3, 35.5 -0.56
BXD24/TyJ m 80.8 19.5   5 8.71 0.241 53.4, 107.0 0.96
BXD25/TyJ m 96.7 42.9   2   30.3 0.444 66.3, 127.0 1.44
BXD29-Tlr4lps-2J/J m 67.3 0.212   2   0.15 0.00315 67.2, 67.5 0.55
BXD2/TyJ m 58.9 39.7   2   28.1 0.675 30.8, 87.0 0.29
BXD31/TyJ m 42.8 23.4   4 11.7 0.547 10.7, 65.6 -0.2
BXD32/TyJ m 112.0 148.0   4 74.1 1.32 18.2, 331.0 1.9
BXD34/TyJ m 69.3 47.4   6 19.4 0.684 13.3, 133.0 0.61
BXD36/TyJ m 66.6 34.9   2   24.7 0.524 41.9, 91.3 0.52
BXD38/TyJ m 24.4 16.6   4 8.32 0.682 9.9, 46.5 -0.76
BXD39/TyJ m 39.5 23.5   3 13.6 0.596 15.2, 62.2 -0.3
BXD40/TyJ m 58.6 27.4   5 12.3 0.468 23.0, 93.4 0.28
BXD42/TyJ m 32.1 11.6   5 5.19 0.362 13.9, 42.9 -0.52
BXD43/RwwJ m 21.9 12.3   4 6.13 0.56 9.4, 37.7 -0.83
BXD44/RwwJ m 44.2 2.26   2   1.6 0.0512 42.6, 45.8 -0.16
BXD45/RwwJ m 78.0 29.7   2   21.0 0.381 57.0, 99.0 0.87
BXD48a/RwwJ m 28.0 11.2   4 5.61 0.401 13.3, 40.6 -0.65
BXD49/RwwJ m 16.8 0.141   2   0.1 0.00842 16.7, 16.9 -0.99
BXD50/RwwJ m 48.5 22.3   4 11.2 0.46 20.2, 74.8 -0.03
BXD51/RwwJ m 32.6 21.8   3 12.6 0.668 19.6, 57.7 -0.51
BXD55/RwwJ m 29.9 21.3   3 12.3 0.712 7.4, 49.8 -0.59
BXD56/RwwJ m 85.9 83.6   2   59.1 0.973 26.8, 145.0 1.11
BXD60/RwwJ m 28.5 15.9   2   11.2 0.559 17.2, 39.7 -0.63
BXD61/RwwJ m 189.0 60.5   3 34.9 0.32 130.0, 251.0 4.24
BXD62/RwwJ m 32.7 21.1   5 9.43 0.645 16.0, 61.1 -0.51
BXD65/RwwJ m 37.0 9.4   2   6.65 0.255 30.3, 43.6 -0.38
BXD66/RwwJ m 23.3 8.2   2   5.8 0.352 17.5, 29.1 -0.79
BXD68/RwwJ m 24.2 10.5   6 4.3 0.436 6.8, 35.6 -0.76
BXD70/RwwJ m 108.0 36.2   3 20.9 0.333 83.7, 150.0 1.78
BXD71/RwwJ m 26.7 13.3   4 6.66 0.498 10.6, 43.2 -0.69
BXD73a/RwwJ m 48.9 41.6   5 18.6 0.851 18.8, 113.0 -0.01
BXD73b/RwwJ m 28.6 20.8   4 10.4 0.727 10.9, 54.6 -0.63
BXD73/RwwJ m 17.9 2.83   2   2.0 0.158 15.9, 19.9 -0.96
BXD75/RwwJ m 62.9 28.0   5 12.5 0.445 39.4, 97.2 0.41
BXD77/RwwJ m 124.0 13.4   2   9.5 0.109 114.0, 133.0 2.27
BXD83/RwwJ m 34.8 22.1   4 11.1 0.636 16.2, 64.7 -0.44
BXD84/RwwJ m 35.2 29.7   3 17.2 0.845 11.6, 68.6 -0.43
BXD85/RwwJ m 61.5 25.2   5 11.3 0.41 28.0, 88.3 0.37
BXD86/RwwJ m 44.0 22.6   4 11.3 0.514 22.3, 72.5 -0.16
BXD89/RwwJ m 72.4 74.1   3 42.8 1.02 28.5, 158.0 0.7
BXD90/RwwJ m 20.1 4.1   2   2.9 0.204 17.2, 23.0 -0.89
BXD95/RwwJ m 40.9 14.4   2   10.2 0.353 30.7, 51.1 -0.26
BXD98/RwwJ m 22.2 8.49   2   6.0 0.382 16.2, 28.2 -0.83
C57BL/6J m 43.5 9.12   5 4.08 0.21 32.4, 56.9 -0.18
DBA/2J m 16.5 11.5   4 5.75 0.698 10.1, 33.7 -1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ m 90.34 16.4971 122.995 57.685
BXD102/RwwJ m 29.6 16.4971 62.255 0.0
BXD12/TyJ m 26.9 26.0842 78.5321 0.0
BXD13/TyJ m 46.45 26.0842 98.0821 0.0
BXD14/TyJ m 39.95 26.0842 91.5821 0.0
BXD16/TyJ m 23.95 26.0842 75.5821 0.0
BXD18/TyJ m 14.05 26.0842 65.6821 0.0
BXD1/TyJ m 36.24 16.4971 68.895 3.585
BXD22/TyJ m 30.9 26.0842 82.5321 0.0
BXD24/TyJ m 80.76 16.4971 113.415 48.105
BXD25/TyJ m 96.65 26.0842 148.2821 45.0179
BXD29-Tlr4lps-2J/J m 67.35 26.0842 118.9821 15.7179
BXD2/TyJ m 58.9 26.0842 110.5321 7.2679
BXD31/TyJ m 42.825 18.4443 79.3344 6.3156
BXD32/TyJ m 112.125 18.4443 148.6344 75.6156
BXD34/TyJ m 69.2833 15.0597 99.0931 39.4735
BXD36/TyJ m 66.6 26.0842 118.2321 14.9679
BXD38/TyJ m 24.4 18.4443 60.9094 0.0
BXD39/TyJ m 39.4667 21.2977 81.6241 0.0
BXD40/TyJ m 58.58 16.4971 91.235 25.925
BXD42/TyJ m 32.08 16.4971 64.735 0.0
BXD43/RwwJ m 21.9 18.4443 58.4094 0.0
BXD44/RwwJ m 44.2 26.0842 95.8321 0.0
BXD45/RwwJ m 78.0 26.0842 129.6321 26.3679
BXD48a/RwwJ m 27.975 18.4443 64.4844 0.0
BXD49/RwwJ m 16.8 26.0842 68.4321 0.0
BXD50/RwwJ m 48.525 18.4443 85.0344 12.0156
BXD51/RwwJ m 32.5667 21.2977 74.7241 0.0
BXD55/RwwJ m 29.9333 21.2977 72.0908 0.0
BXD56/RwwJ m 85.9 26.0842 137.5321 34.2679
BXD60/RwwJ m 28.45 26.0842 80.0821 0.0
BXD61/RwwJ m 189.3333 21.2977 231.4908 147.1759
BXD62/RwwJ m 32.7 16.4971 65.355 0.045
BXD65/RwwJ m 36.95 26.0842 88.5821 0.0
BXD66/RwwJ m 23.3 26.0842 74.9321 0.0
BXD68/RwwJ m 24.1667 15.0597 53.9765 0.0
BXD70/RwwJ m 108.5 21.2977 150.6574 66.3426
BXD71/RwwJ m 26.75 18.4443 63.2594 0.0
BXD73a/RwwJ m 48.86 16.4971 81.515 16.205
BXD73b/RwwJ m 28.575 18.4443 65.0844 0.0
BXD73/RwwJ m 17.9 26.0842 69.5321 0.0
BXD75/RwwJ m 62.92 16.4971 95.575 30.265
BXD77/RwwJ m 123.5 26.0842 175.1321 71.8679
BXD83/RwwJ m 34.775 18.4443 71.2844 0.0
BXD84/RwwJ m 35.2 21.2977 77.3574 0.0
BXD85/RwwJ m 61.48 16.4971 94.135 28.825
BXD86/RwwJ m 43.975 18.4443 80.4844 7.4656
BXD89/RwwJ m 72.4 21.2977 114.5574 30.2426
BXD90/RwwJ m 20.1 26.0842 71.7321 0.0
BXD95/RwwJ m 40.9 26.0842 92.5321 0.0
BXD98/RwwJ m 22.2 26.0842 73.8321 0.0
C57BL/6J m 43.52 16.4971 76.175 10.865
DBA/2J m 16.475 18.4443 52.9844 0.0




  GWAS USING LINEAR MIXED MODELS