Phenotype measure:   Jentsch1   revers_no_choice


  STRAIN COMPARISON PLOT
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Jentsch1 - number of trials with no choice made in first 30 s, reversal phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested53 strains
Mean of the strain means18.1   n
Median of the strain means12.2   n
SD of the strain means± 15.4
Coefficient of variation (CV)0.855
Min–max range of strain means0   –   59.0   n
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 52 33478.2746 643.813 1.8034 0.0043
Residuals 123 43910.5833 356.9966


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ m 30.4 29.6   5 13.3 0.975 8.0, 81.0 0.8
BXD102/RwwJ m 8.2 12.9   5 5.76 1.57 -0.64
BXD12/TyJ m 7.5 4.95   2   3.5 0.66 4.0, 11.0 -0.68
BXD13/TyJ m 10.5 13.4   2   9.5 1.28 1.0, 20.0 -0.49
BXD14/TyJ m 6.0 2.83   2   2.0 0.471 4.0, 8.0 -0.78
BXD16/TyJ m 0.0 0.0   2   0.0 0.0 -1.17
BXD18/TyJ m 46.0 55.2   2   39.0 1.2 7.0, 85.0 1.81
BXD1/TyJ m 8.0 10.9   5 4.89 1.37 -0.65
BXD22/TyJ m 20.5 20.5   2   14.5 1.0 6.0, 35.0 0.16
BXD24/TyJ m 32.2 19.7   5 8.79 0.611 19.0, 67.0 0.91
BXD25/TyJ m 57.0 11.3   2   8.0 0.198 49.0, 65.0 2.52
BXD29-Tlr4lps-2J/J m 39.0 39.6   2   28.0 1.02 11.0, 67.0 1.36
BXD2/TyJ m 36.0 48.1   2   34.0 1.34 2.0, 70.0 1.16
BXD31/TyJ m 13.8 8.81   4 4.4 0.641 2.0, 21.0 -0.28
BXD32/TyJ m 31.2 35.3   4 17.7 1.13 4.0, 82.0 0.85
BXD34/TyJ m 36.8 30.4   6 12.4 0.826 3.0, 78.0 1.21
BXD36/TyJ m 44.5 55.9   2   39.5 1.26 5.0, 84.0 1.71
BXD38/TyJ m 4.25 6.55   4 3.28 1.54 -0.89
BXD39/TyJ m 38.7 29.2   3 16.9 0.755 5.0, 57.0 1.34
BXD40/TyJ m 11.0 8.63   5 3.86 0.785 1.0, 24.0 -0.46
BXD42/TyJ m 12.2 7.89   5 3.53 0.646 2.0, 22.0 -0.38
BXD43/RwwJ m 2.5 2.52   4 1.26 1.01 -1.01
BXD44/RwwJ m 35.5 19.1   2   13.5 0.538 22.0, 49.0 1.13
BXD45/RwwJ m 59.0 26.9   2   19.0 0.455 40.0, 78.0 2.65
BXD48a/RwwJ m 17.0 16.6   4 8.28 0.974 1.0, 40.0 -0.07
BXD49/RwwJ m 4.5 6.36   2   4.5 1.41 -0.88
BXD50/RwwJ m 11.0 8.98   4 4.49 0.816 2.0, 23.0 -0.46
BXD51/RwwJ m 12.0 11.5   3 6.66 0.961 1.0, 24.0 -0.39
BXD55/RwwJ m 4.0 2.65   3 1.53 0.661 2.0, 7.0 -0.91
BXD56/RwwJ m 36.5 43.1   2   30.5 1.18 6.0, 67.0 1.19
BXD60/RwwJ m 10.0 1.41   2   1.0 0.141 9.0, 11.0 -0.52
BXD61/RwwJ m 46.0 7.55   3 4.36 0.164 38.0, 53.0 1.81
BXD62/RwwJ m 7.0 10.3   5 4.59 1.47 1.0, 25.0 -0.72
BXD65/RwwJ m 26.0 31.1   2   22.0 1.2 4.0, 48.0 0.51
BXD66/RwwJ m 4.5 0.707   2   0.5 0.157 4.0, 5.0 -0.88
BXD68/RwwJ m 7.17 7.03   6 2.87 0.98 1.0, 18.0 -0.71
BXD70/RwwJ m 15.7 0.577   3 0.333 0.0369 15.0, 16.0 -0.15
BXD71/RwwJ m 5.75 3.4   4 1.7 0.592 3.0, 10.0 -0.8
BXD73a/RwwJ m 7.6 6.66   5 2.98 0.876 1.0, 16.0 -0.68
BXD73b/RwwJ m 9.5 13.2   4 6.59 1.39 1.0, 29.0 -0.55
BXD73/RwwJ m 2.5 3.54   2   2.5 1.41 -1.01
BXD75/RwwJ m 26.6 38.9   5 17.4 1.46 0.55
BXD77/RwwJ m 25.0 14.1   2   10.0 0.566 15.0, 35.0 0.45
BXD83/RwwJ m 3.25 2.87   4 1.44 0.884 -0.96
BXD84/RwwJ m 14.3 17.6   3 10.2 1.23 -0.24
BXD85/RwwJ m 15.2 11.0   5 4.93 0.726 5.0, 32.0 -0.19
BXD86/RwwJ m 13.5 16.3   4 8.17 1.21 -0.3
BXD89/RwwJ m 12.7 9.07   3 5.24 0.716 6.0, 23.0 -0.35
BXD90/RwwJ m 0.5 0.707   2   0.5 1.41 -1.14
BXD95/RwwJ m 3.5 0.707   2   0.5 0.202 3.0, 4.0 -0.94
BXD98/RwwJ m 6.0 2.83   2   2.0 0.471 4.0, 8.0 -0.78
C57BL/6J m 14.6 11.7   5 5.22 0.8 1.0, 33.0 -0.22
DBA/2J m 5.0 7.57   4 3.79 1.51 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ m 30.4 8.4498 47.1259 13.6741
BXD102/RwwJ m 8.2 8.4498 24.9259 -8.5259
BXD12/TyJ m 7.5 13.3603 33.9459 -18.9459
BXD13/TyJ m 10.5 13.3603 36.9459 -15.9459
BXD14/TyJ m 6.0 13.3603 32.4459 -20.4459
BXD16/TyJ m 0.0 13.3603 26.4459 -26.4459
BXD18/TyJ m 46.0 13.3603 72.4459 19.5541
BXD1/TyJ m 8.0 8.4498 24.7259 -8.7259
BXD22/TyJ m 20.5 13.3603 46.9459 -5.9459
BXD24/TyJ m 32.2 8.4498 48.9259 15.4741
BXD25/TyJ m 57.0 13.3603 83.4459 30.5541
BXD29-Tlr4lps-2J/J m 39.0 13.3603 65.4459 12.5541
BXD2/TyJ m 36.0 13.3603 62.4459 9.5541
BXD31/TyJ m 13.75 9.4472 32.4501 -4.9501
BXD32/TyJ m 31.25 9.4472 49.9501 12.5499
BXD34/TyJ m 36.8333 7.7136 52.1019 21.5648
BXD36/TyJ m 44.5 13.3603 70.9459 18.0541
BXD38/TyJ m 4.25 9.4472 22.9501 -14.4501
BXD39/TyJ m 38.6667 10.9087 60.2597 17.0736
BXD40/TyJ m 11.0 8.4498 27.7259 -5.7259
BXD42/TyJ m 12.2 8.4498 28.9259 -4.5259
BXD43/RwwJ m 2.5 9.4472 21.2001 -16.2001
BXD44/RwwJ m 35.5 13.3603 61.9459 9.0541
BXD45/RwwJ m 59.0 13.3603 85.4459 32.5541
BXD48a/RwwJ m 17.0 9.4472 35.7001 -1.7001
BXD49/RwwJ m 4.5 13.3603 30.9459 -21.9459
BXD50/RwwJ m 11.0 9.4472 29.7001 -7.7001
BXD51/RwwJ m 12.0 10.9087 33.593 -9.593
BXD55/RwwJ m 4.0 10.9087 25.593 -17.593
BXD56/RwwJ m 36.5 13.3603 62.9459 10.0541
BXD60/RwwJ m 10.0 13.3603 36.4459 -16.4459
BXD61/RwwJ m 46.0 10.9087 67.593 24.407
BXD62/RwwJ m 7.0 8.4498 23.7259 -9.7259
BXD65/RwwJ m 26.0 13.3603 52.4459 -0.4459
BXD66/RwwJ m 4.5 13.3603 30.9459 -21.9459
BXD68/RwwJ m 7.1667 7.7136 22.4352 -8.1019
BXD70/RwwJ m 15.6667 10.9087 37.2597 -5.9264
BXD71/RwwJ m 5.75 9.4472 24.4501 -12.9501
BXD73a/RwwJ m 7.6 8.4498 24.3259 -9.1259
BXD73b/RwwJ m 9.5 9.4472 28.2001 -9.2001
BXD73/RwwJ m 2.5 13.3603 28.9459 -23.9459
BXD75/RwwJ m 26.6 8.4498 43.3259 9.8741
BXD77/RwwJ m 25.0 13.3603 51.4459 -1.4459
BXD83/RwwJ m 3.25 9.4472 21.9501 -15.4501
BXD84/RwwJ m 14.3333 10.9087 35.9264 -7.2597
BXD85/RwwJ m 15.2 8.4498 31.9259 -1.5259
BXD86/RwwJ m 13.5 9.4472 32.2001 -5.2001
BXD89/RwwJ m 12.6667 10.9087 34.2597 -8.9264
BXD90/RwwJ m 0.5 13.3603 26.9459 -25.9459
BXD95/RwwJ m 3.5 13.3603 29.9459 -22.9459
BXD98/RwwJ m 6.0 13.3603 32.4459 -20.4459
C57BL/6J m 14.6 8.4498 31.3259 -2.1259
DBA/2J m 5.0 9.4472 23.7001 -13.7001




  GWAS USING LINEAR MIXED MODELS