Project measure / variable:   Jentsch1   acq_latency_correct

ID, description, units MPD:40305   acq_latency_correct   average latency to make correct choice, acquisition phase   [s]  
Data set, strains Jentsch1   BXD w/par   53 strains     sex: m     age: 17wks
Procedure operant conditioning chamber
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Jentsch1 - average latency to make correct choice, acquisition phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested53 strains
Mean of the strain means7.47   s
Median of the strain means7.35   s
SD of the strain means± 2.03
Coefficient of variation (CV)0.272
Min–max range of strain means3.85   –   12.7   s
Mean sample size per strain3.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 52 676.8134 13.0156 1.5065 0.0342
Residuals 123 1062.693 8.6398


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD100/RwwJ m 8.84 2.21   5 0.988 0.25 5.5, 11.0 0.67
BXD102/RwwJ m 5.06 1.62   5 0.726 0.321 3.8, 7.7 -1.19
BXD12/TyJ m 9.25 3.18   2   2.25 0.344 7.0, 11.5 0.87
BXD13/TyJ m 7.85 1.34   2   0.95 0.171 6.9, 8.8 0.19
BXD14/TyJ m 7.6 1.56   2   1.1 0.205 6.5, 8.7 0.06
BXD16/TyJ m 5.15 0.212   2   0.15 0.0412 5.0, 5.3 -1.14
BXD18/TyJ m 8.3 3.11   2   2.2 0.375 6.1, 10.5 0.41
BXD1/TyJ m 8.68 2.05   5 0.916 0.236 6.3, 11.9 0.59
BXD22/TyJ m 7.7 2.55   2   1.8 0.331 5.9, 9.5 0.11
BXD24/TyJ m 8.56 2.7   5 1.21 0.315 4.2, 11.0 0.53
BXD25/TyJ m 10.1 0.99   2   0.7 0.098 9.4, 10.8 1.29
BXD29-Tlr4lps-2J/J m 11.1 1.77   2   1.25 0.16 9.8, 12.3 1.78
BXD2/TyJ m 9.3 5.09   2   3.6 0.547 5.7, 12.9 0.9
BXD31/TyJ m 8.15 4.76   4 2.38 0.584 4.7, 14.9 0.33
BXD32/TyJ m 6.05 2.0   4 1.0 0.331 4.4, 8.7 -0.7
BXD34/TyJ m 7.98 4.05   6 1.65 0.508 4.5, 15.3 0.25
BXD36/TyJ m 12.0 6.79   2   4.8 0.566 7.2, 16.8 2.23
BXD38/TyJ m 7.0 3.42   4 1.71 0.488 2.1, 9.7 -0.23
BXD39/TyJ m 12.7 0.473   3 0.273 0.0371 12.2, 13.1 2.57
BXD40/TyJ m 6.46 2.02   5 0.903 0.312 3.3, 8.8 -0.5
BXD42/TyJ m 4.7 4.34   5 1.94 0.923 0.9, 12.1 -1.36
BXD43/RwwJ m 5.42 1.15   4 0.576 0.213 4.1, 6.7 -1.01
BXD44/RwwJ m 9.25 5.02   2   3.55 0.543 5.7, 12.8 0.87
BXD45/RwwJ m 8.6 1.84   2   1.3 0.214 7.3, 9.9 0.55
BXD48a/RwwJ m 7.33 4.64   4 2.32 0.633 3.3, 13.8 -0.07
BXD49/RwwJ m 10.5 1.84   2   1.3 0.175 9.2, 11.8 1.49
BXD50/RwwJ m 8.18 4.04   4 2.02 0.494 5.4, 14.0 0.35
BXD51/RwwJ m 5.9 2.74   3 1.58 0.464 3.8, 9.0 -0.77
BXD55/RwwJ m 4.9 0.693   3 0.4 0.141 4.1, 5.3 -1.26
BXD56/RwwJ m 5.8 1.41   2   1.0 0.244 4.8, 6.8 -0.82
BXD60/RwwJ m 6.45 5.87   2   4.15 0.91 2.3, 10.6 -0.5
BXD61/RwwJ m 6.93 4.1   3 2.37 0.592 2.5, 10.6 -0.27
BXD62/RwwJ m 9.4 1.7   5 0.76 0.181 7.7, 12.1 0.95
BXD65/RwwJ m 6.85 1.2   2   0.85 0.175 6.0, 7.7 -0.31
BXD66/RwwJ m 6.1 1.7   2   1.2 0.278 4.9, 7.3 -0.67
BXD68/RwwJ m 4.53 2.35   6 0.96 0.519 1.3, 8.5 -1.45
BXD70/RwwJ m 8.63 2.52   3 1.45 0.291 6.3, 11.3 0.57
BXD71/RwwJ m 4.17 1.73   4 0.863 0.414 1.7, 5.5 -1.62
BXD73a/RwwJ m 9.6 1.77   5 0.791 0.184 7.8, 11.7 1.05
BXD73b/RwwJ m 5.88 2.23   4 1.11 0.379 4.5, 9.2 -0.78
BXD73/RwwJ m 5.9 4.24   2   3.0 0.719 2.9, 8.9 -0.77
BXD75/RwwJ m 6.2 1.97   5 0.879 0.317 3.7, 9.1 -0.63
BXD77/RwwJ m 4.9 0.141   2   0.1 0.0289 4.8, 5.0 -1.26
BXD83/RwwJ m 11.2 2.66   4 1.33 0.237 8.7, 13.6 1.83
BXD84/RwwJ m 8.03 2.45   3 1.41 0.305 5.6, 10.5 0.27
BXD85/RwwJ m 6.3 1.41   5 0.628 0.223 4.4, 8.3 -0.58
BXD86/RwwJ m 8.73 5.52   4 2.76 0.632 2.7, 14.3 0.62
BXD89/RwwJ m 6.13 3.56   3 2.05 0.58 3.6, 10.2 -0.66
BXD90/RwwJ m 3.85 0.778   2   0.55 0.202 3.3, 4.4 -1.78
BXD95/RwwJ m 6.6 3.39   2   2.4 0.514 4.2, 9.0 -0.43
BXD98/RwwJ m 7.35 3.46   2   2.45 0.471 4.9, 9.8 -0.06
C57BL/6J m 8.16 3.0   5 1.34 0.368 4.8, 12.9 0.34
DBA/2J m 5.75 1.94   4 0.972 0.338 3.5, 8.2 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100/RwwJ m 8.84 1.3145 11.442 6.238
BXD102/RwwJ m 5.06 1.3145 7.662 2.458
BXD12/TyJ m 9.25 2.0784 13.3641 5.1359
BXD13/TyJ m 7.85 2.0784 11.9641 3.7359
BXD14/TyJ m 7.6 2.0784 11.7141 3.4859
BXD16/TyJ m 5.15 2.0784 9.2641 1.0359
BXD18/TyJ m 8.3 2.0784 12.4141 4.1859
BXD1/TyJ m 8.68 1.3145 11.282 6.078
BXD22/TyJ m 7.7 2.0784 11.8141 3.5859
BXD24/TyJ m 8.56 1.3145 11.162 5.958
BXD25/TyJ m 10.1 2.0784 14.2141 5.9859
BXD29-Tlr4lps-2J/J m 11.05 2.0784 15.1641 6.9359
BXD2/TyJ m 9.3 2.0784 13.4141 5.1859
BXD31/TyJ m 8.15 1.4697 11.0591 5.2409
BXD32/TyJ m 6.05 1.4697 8.9591 3.1409
BXD34/TyJ m 7.9833 1.2 10.3586 5.608
BXD36/TyJ m 12.0 2.0784 16.1141 7.8859
BXD38/TyJ m 7.0 1.4697 9.9091 4.0909
BXD39/TyJ m 12.7333 1.697 16.0925 9.3742
BXD40/TyJ m 6.46 1.3145 9.062 3.858
BXD42/TyJ m 4.7 1.3145 7.302 2.098
BXD43/RwwJ m 5.425 1.4697 8.3341 2.5159
BXD44/RwwJ m 9.25 2.0784 13.3641 5.1359
BXD45/RwwJ m 8.6 2.0784 12.7141 4.4859
BXD48a/RwwJ m 7.325 1.4697 10.2341 4.4159
BXD49/RwwJ m 10.5 2.0784 14.6141 6.3859
BXD50/RwwJ m 8.175 1.4697 11.0841 5.2659
BXD51/RwwJ m 5.9 1.697 9.2592 2.5408
BXD55/RwwJ m 4.9 1.697 8.2592 1.5408
BXD56/RwwJ m 5.8 2.0784 9.9141 1.6859
BXD60/RwwJ m 6.45 2.0784 10.5641 2.3359
BXD61/RwwJ m 6.9333 1.697 10.2925 3.5742
BXD62/RwwJ m 9.4 1.3145 12.002 6.798
BXD65/RwwJ m 6.85 2.0784 10.9641 2.7359
BXD66/RwwJ m 6.1 2.0784 10.2141 1.9859
BXD68/RwwJ m 4.5333 1.2 6.9086 2.158
BXD70/RwwJ m 8.6333 1.697 11.9925 5.2742
BXD71/RwwJ m 4.175 1.4697 7.0841 1.2659
BXD73a/RwwJ m 9.6 1.3145 12.202 6.998
BXD73b/RwwJ m 5.875 1.4697 8.7841 2.9659
BXD73/RwwJ m 5.9 2.0784 10.0141 1.7859
BXD75/RwwJ m 6.2 1.3145 8.802 3.598
BXD77/RwwJ m 4.9 2.0784 9.0141 0.7859
BXD83/RwwJ m 11.25 1.4697 14.1591 8.3409
BXD84/RwwJ m 8.0333 1.697 11.3925 4.6742
BXD85/RwwJ m 6.3 1.3145 8.902 3.698
BXD86/RwwJ m 8.725 1.4697 11.6341 5.8159
BXD89/RwwJ m 6.1333 1.697 9.4925 2.7742
BXD90/RwwJ m 3.85 2.0784 7.9641 0.0
BXD95/RwwJ m 6.6 2.0784 10.7141 2.4859
BXD98/RwwJ m 7.35 2.0784 11.4641 3.2359
C57BL/6J m 8.16 1.3145 10.762 5.558
DBA/2J m 5.75 1.4697 8.6591 2.8409




  GWAS USING LINEAR MIXED MODELS