Project measure / variable:   Harrill1   microvesic_dif_ctrl

ID, description, units MPD:39551   microvesic_dif_ctrl   hepatocytic cytoplasmic, microvesiculation, diffuse   [score]  control  
isoniazid study
Data set, strains Harrill1   inbred   34 strains     sex: f     age: 8-10wks
Procedure histopathology
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  STRAIN COMPARISON PLOT
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Harrill1 - hepatocytic cytoplasmic, microvesiculation, diffuse control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested34 strains
Mean of the strain means0.868   score
Median of the strain means0.500   score
SD of the strain means± 0.913
Coefficient of variation (CV)1.05
Min–max range of strain means0   –   3.75   score
Mean sample size per strain4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 33 110.1176 3.3369 7.8245 < 0.0001
Residuals 102 43.5 0.4265


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.25 0.5   4 0.25 0.222 2.0, 3.0 1.51
A/J f 2.25 0.957   4 0.479 0.426 1.0, 3.0 1.51
AKR/J f 1.0 0.816   4 0.408 0.816 0.14
BALB/cJ f 0.0 0.0   4 0.0 0.0 -0.95
BTBR T+ Itpr3tf/J f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.14
BUB/BnJ f 0.25 0.5   4 0.25 2.0 -0.68
C3H/HeJ f 0.5 0.577   4 0.289 1.15 -0.4
C57BL/6J f 1.75 1.26   4 0.629 0.719 0.97
C57BLKS/J f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.14
C57BR/cdJ f 0.5 1.0   4 0.5 2.0 -0.4
C58/J f 1.75 1.26   4 0.629 0.719 0.97
CBA/J f 1.0 0.0   4 0.0 0.0 1.0, 1.0 0.14
CE/J f 2.0 0.0   4 0.0 0.0 2.0, 2.0 1.24
DBA/2J f 0.0 0.0   4 0.0 0.0 -0.95
FVB/NJ f 1.5 0.577   4 0.289 0.385 1.0, 2.0 0.69
I/LnJ f 0.0 0.0   4 0.0 0.0 -0.95
KK/HlJ f 0.25 0.5   4 0.25 2.0 -0.68
LG/J f 0.0 0.0   4 0.0 0.0 -0.95
LP/J f 0.0 0.0   4 0.0 0.0 -0.95
MA/MyJ f 3.75 0.5   4 0.25 0.133 3.0, 4.0 3.16
MRL/MpJ f 0.5 0.577   4 0.289 1.15 -0.4
NOD/ShiLtJ f 0.0 0.0   4 0.0 0.0 -0.95
NON/ShiLtJ f 0.5 0.577   4 0.289 1.15 -0.4
NOR/LtJ f 0.25 0.5   4 0.25 2.0 -0.68
NZW/LacJ f 2.25 0.5   4 0.25 0.222 2.0, 3.0 1.51
P/J f 0.0 0.0   4 0.0 0.0 -0.95
PL/J f 0.75 0.957   4 0.479 1.28 -0.13
PWK/PhJ f 0.5 1.0   4 0.5 2.0 -0.4
RIIIS/J f 0.0 0.0   4 0.0 0.0 -0.95
SEA/GnJ f 2.0 1.41   4 0.707 0.707 1.24
SJL/J f 0.5 0.577   4 0.289 1.15 -0.4
SM/J f 1.0 1.15   4 0.577 1.15 0.14
SWR/J f 0.5 0.577   4 0.289 1.15 -0.4
WSB/EiJ f 0.0 0.0   4 0.0 0.0 -0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.25 0.3265 2.8977 1.6023
A/J f 2.25 0.3265 2.8977 1.6023
AKR/J f 1.0 0.3265 1.6477 0.3523
BALB/cJ f 0.0 0.3265 0.6477 -0.6477
BTBR T+ Itpr3tf/J f 1.0 0.3265 1.6477 0.3523
BUB/BnJ f 0.25 0.3265 0.8977 -0.3977
C3H/HeJ f 0.5 0.3265 1.1477 -0.1477
C57BL/6J f 1.75 0.3265 2.3977 1.1023
C57BLKS/J f 1.0 0.3265 1.6477 0.3523
C57BR/cdJ f 0.5 0.3265 1.1477 -0.1477
C58/J f 1.75 0.3265 2.3977 1.1023
CBA/J f 1.0 0.3265 1.6477 0.3523
CE/J f 2.0 0.3265 2.6477 1.3523
DBA/2J f 0.0 0.3265 0.6477 -0.6477
FVB/NJ f 1.5 0.3265 2.1477 0.8523
I/LnJ f 0.0 0.3265 0.6477 -0.6477
KK/HlJ f 0.25 0.3265 0.8977 -0.3977
LG/J f 0.0 0.3265 0.6477 -0.6477
LP/J f 0.0 0.3265 0.6477 -0.6477
MA/MyJ f 3.75 0.3265 4.3977 3.1023
MRL/MpJ f 0.5 0.3265 1.1477 -0.1477
NOD/ShiLtJ f 0.0 0.3265 0.6477 -0.6477
NON/ShiLtJ f 0.5 0.3265 1.1477 -0.1477
NOR/LtJ f 0.25 0.3265 0.8977 -0.3977
NZW/LacJ f 2.25 0.3265 2.8977 1.6023
P/J f 0.0 0.3265 0.6477 -0.6477
PL/J f 0.75 0.3265 1.3977 0.1023
PWK/PhJ f 0.5 0.3265 1.1477 -0.1477
RIIIS/J f 0.0 0.3265 0.6477 -0.6477
SEA/GnJ f 2.0 0.3265 2.6477 1.3523
SJL/J f 0.5 0.3265 1.1477 -0.1477
SM/J f 1.0 0.3265 1.6477 0.3523
SWR/J f 0.5 0.3265 1.1477 -0.1477
WSB/EiJ f 0.0 0.3265 0.6477 -0.6477




  GWAS USING LINEAR MIXED MODELS