Phenotype measure:   Harrill1   lymphohistio_portal_trt

ID, description, units MPD:39542   lymphohistio_portal_trt   lymphohistiocytic, portal, multifocal infiltrate   [score]  isoniazid
isoniazid study
Data set, strains Harrill1   inbred   34 strains     sex: f     age: 8-10wks
Procedure histopathology
Ontology mappings

  STRAIN COMPARISON PLOT
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Harrill1 - lymphohistiocytic, portal, multifocal infiltrate isoniazid



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested34 strains
Mean of the strain means0.304   score
Median of the strain means0.250   score
SD of the strain means± 0.267
Coefficient of variation (CV)0.877
Min–max range of strain means0   –   1.00   score
Mean sample size per strain4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 33 9.2886 0.2815 1.3298 0.1422
Residuals 100 21.1667 0.2117


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.25 0.5   4 0.25 2.0 -0.2
A/J f 0.5 1.0   4 0.5 2.0 0.74
AKR/J f 0.25 0.5   4 0.25 2.0 -0.2
BALB/cJ f 0.75 0.5   4 0.25 0.667 1.67
BTBR T+ Itpr3tf/J f 0.25 0.5   4 0.25 2.0 -0.2
BUB/BnJ f 0.25 0.5   4 0.25 2.0 -0.2
C3H/HeJ f 0.0 0.0   4 0.0 0.0 -1.14
C57BL/6J f 0.75 0.5   4 0.25 0.667 1.67
C57BLKS/J f 0.5 0.577   4 0.289 1.15 0.74
C57BR/cdJ f 0.25 0.5   4 0.25 2.0 -0.2
C58/J f 0.5 0.577   4 0.289 1.15 0.74
CBA/J f 0.25 0.5   4 0.25 2.0 -0.2
CE/J f 0.0 0.0   4 0.0 0.0 -1.14
DBA/2J f 0.5 0.577   4 0.289 1.15 0.74
FVB/NJ f 0.5 0.577   4 0.289 1.15 0.74
I/LnJ f 0.25 0.5   4 0.25 2.0 -0.2
KK/HlJ f 0.25 0.5   4 0.25 2.0 -0.2
LG/J f 0.333 0.577   3 0.333 1.73 0.11
LP/J f 0.5 0.577   4 0.289 1.15 0.74
MA/MyJ f 0.0 0.0   4 0.0 0.0 -1.14
MRL/MpJ f 0.75 0.5   4 0.25 0.667 1.67
NOD/ShiLtJ f 0.0 0.0   4 0.0 0.0 -1.14
NON/ShiLtJ f 0.25 0.5   4 0.25 2.0 -0.2
NOR/LtJ f 0.5 0.577   4 0.289 1.15 0.74
NZW/LacJ f 0.25 0.5   4 0.25 2.0 -0.2
P/J f 0.0 0.0   4 0.0 0.0 -1.14
PL/J f 0.0 0.0   4 0.0 0.0 -1.14
PWK/PhJ f 0.0 0.0   4 0.0 0.0 -1.14
RIIIS/J f 0.0 0.0   4 0.0 0.0 -1.14
SEA/GnJ f 0.5 0.577   4 0.289 1.15 0.74
SJL/J f 0.25 0.5   4 0.25 2.0 -0.2
SM/J f 0.0 0.0   4 0.0 0.0 -1.14
SWR/J f 1.0 0.0   4 0.0 0.0 1.0, 1.0 2.61
WSB/EiJ f 0.0 0.0   3 0.0 0.0 -1.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.25 0.23 0.7064 -0.2064
A/J f 0.5 0.23 0.9564 0.0436
AKR/J f 0.25 0.23 0.7064 -0.2064
BALB/cJ f 0.75 0.23 1.2064 0.2936
BTBR T+ Itpr3tf/J f 0.25 0.23 0.7064 -0.2064
BUB/BnJ f 0.25 0.23 0.7064 -0.2064
C3H/HeJ f 0.0 0.23 0.4564 -0.4564
C57BL/6J f 0.75 0.23 1.2064 0.2936
C57BLKS/J f 0.5 0.23 0.9564 0.0436
C57BR/cdJ f 0.25 0.23 0.7064 -0.2064
C58/J f 0.5 0.23 0.9564 0.0436
CBA/J f 0.25 0.23 0.7064 -0.2064
CE/J f 0.0 0.23 0.4564 -0.4564
DBA/2J f 0.5 0.23 0.9564 0.0436
FVB/NJ f 0.5 0.23 0.9564 0.0436
I/LnJ f 0.25 0.23 0.7064 -0.2064
KK/HlJ f 0.25 0.23 0.7064 -0.2064
LG/J f 0.3333 0.2656 0.8603 -0.1937
LP/J f 0.5 0.23 0.9564 0.0436
MA/MyJ f 0.0 0.23 0.4564 -0.4564
MRL/MpJ f 0.75 0.23 1.2064 0.2936
NOD/ShiLtJ f 0.0 0.23 0.4564 -0.4564
NON/ShiLtJ f 0.25 0.23 0.7064 -0.2064
NOR/LtJ f 0.5 0.23 0.9564 0.0436
NZW/LacJ f 0.25 0.23 0.7064 -0.2064
P/J f 0.0 0.23 0.4564 -0.4564
PL/J f 0.0 0.23 0.4564 -0.4564
PWK/PhJ f 0.0 0.23 0.4564 -0.4564
RIIIS/J f 0.0 0.23 0.4564 -0.4564
SEA/GnJ f 0.5 0.23 0.9564 0.0436
SJL/J f 0.25 0.23 0.7064 -0.2064
SM/J f 0.0 0.23 0.4564 -0.4564
SWR/J f 1.0 0.23 1.4564 0.5436
WSB/EiJ f 0.0 0.2656 0.527 -0.527




  GWAS USING LINEAR MIXED MODELS