Project measure / variable:   Harrill1   spleen_trt

ID, description, units MPD:39512   spleen_trt   spleen weight   [g]  isoniazid  
isoniazid study
Data set, strains Harrill1   inbred   33 strains     sex: f     age: 8-10wks
Procedure organ weights
Ontology mappings

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  STRAIN COMPARISON PLOT
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Harrill1 - spleen weight isoniazid



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested33 strains
Mean of the strain means0.0577   g
Median of the strain means0.0595   g
SD of the strain means± 0.0217
Coefficient of variation (CV)0.376
Min–max range of strain means0.0140   –   0.0995   g
Mean sample size per strain3.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 32 0.052 0.0016 15.3295 < 0.0001
Residuals 88 0.0093 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0375 0.0109   4 0.00545 0.291 0.026, 0.051 -0.93
A/J f 0.0365 0.00636   2   0.0045 0.174 0.032, 0.041 -0.98
AKR/J f 0.0587 0.00896   4 0.00448 0.152 0.049, 0.069 0.05
BALB/cJ f 0.0577 0.0131   4 0.00656 0.227 0.046, 0.076 0.0
BTBR T+ Itpr3tf/J f 0.058 0.00294   4 0.00147 0.0508 0.055, 0.061 0.02
BUB/BnJ f 0.0995 0.0105   4 0.00524 0.105 0.086, 0.11 1.93
C3H/HeJ f 0.082 0.0206   4 0.0103 0.251 0.059, 0.108 1.12
C57BL/6J f 0.051 0.00383   4 0.00191 0.0751 0.048, 0.056 -0.31
C57BLKS/J f 0.0607 0.00737   4 0.00368 0.121 0.05, 0.066 0.14
C57BR/cdJ f 0.0525 0.0118   4 0.00589 0.225 0.041, 0.065 -0.24
C58/J f 0.067 0.00983   4 0.00492 0.147 0.058, 0.079 0.43
CBA/J f 0.0595 0.00545   4 0.00272 0.0915 0.052, 0.064 0.08
CE/J f 0.0375 0.00191   4 0.000957 0.0511 0.035, 0.039 -0.93
DBA/2J f 0.062 0.00622   4 0.00311 0.1 0.055, 0.069 0.2
FVB/NJ f 0.0727 0.0106   4 0.00531 0.146 0.06, 0.086 0.69
I/LnJ f 0.0645 0.0108   4 0.00539 0.167 0.055, 0.077 0.32
KK/HlJ f 0.0765 0.00387   4 0.00194 0.0506 0.073, 0.082 0.87
LG/J f 0.088 0.002   3 0.00115 0.0227 0.086, 0.09 1.4
LP/J f 0.03 0.00721   3 0.00416 0.24 0.022, 0.036 -1.28
MA/MyJ f 0.0305 0.00919   2   0.0065 0.301 0.024, 0.037 -1.25
MRL/MpJ f 0.081 0.0109   4 0.00543 0.134 0.07, 0.096 1.08
NOD/ShiLtJ f 0.0655 0.0142   4 0.0071 0.217 0.055, 0.086 0.36
NON/ShiLtJ f 0.0673 0.0151   3 0.00874 0.225 0.05, 0.078 0.44
NOR/LtJ f 0.0545 0.00806   4 0.00403 0.148 0.046, 0.064 -0.15
NZW/LacJ f 0.0745 0.0124   4 0.00622 0.167 0.06, 0.088 0.78
PL/J f 0.0323 0.00777   3 0.00448 0.24 0.026, 0.041 -1.17
PWK/PhJ f 0.0222 0.00785   4 0.00392 0.353 0.012, 0.031 -1.64
RIIIS/J f 0.0305 0.0058   4 0.0029 0.19 0.022, 0.035 -1.25
SEA/GnJ f 0.0892 0.0199   4 0.00994 0.223 0.078, 0.119 1.45
SJL/J f 0.0892 0.0102   4 0.00512 0.115 0.081, 0.104 1.45
SM/J f 0.0335 0.00212   2   0.0015 0.0633 0.032, 0.035 -1.11
SWR/J f 0.0668 0.0123   4 0.00614 0.184 0.056, 0.081 0.42
WSB/EiJ f 0.014 0.00458   3 0.00265 0.327 0.01, 0.019 -2.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0375 0.0051 0.0477 0.0273
A/J f 0.0365 0.0073 0.051 0.022
AKR/J f 0.0587 0.0051 0.069 0.0485
BALB/cJ f 0.0578 0.0051 0.068 0.0475
BTBR T+ Itpr3tf/J f 0.058 0.0051 0.0682 0.0478
BUB/BnJ f 0.0995 0.0051 0.1097 0.0893
C3H/HeJ f 0.082 0.0051 0.0922 0.0718
C57BL/6J f 0.051 0.0051 0.0612 0.0408
C57BLKS/J f 0.0608 0.0051 0.071 0.0505
C57BR/cdJ f 0.0525 0.0051 0.0627 0.0423
C58/J f 0.067 0.0051 0.0772 0.0568
CBA/J f 0.0595 0.0051 0.0697 0.0493
CE/J f 0.0375 0.0051 0.0477 0.0273
DBA/2J f 0.062 0.0051 0.0722 0.0518
FVB/NJ f 0.0728 0.0051 0.083 0.0625
I/LnJ f 0.0645 0.0051 0.0747 0.0543
KK/HlJ f 0.0765 0.0051 0.0867 0.0663
LG/J f 0.088 0.0059 0.0998 0.0762
LP/J f 0.03 0.0059 0.0418 0.0182
MA/MyJ f 0.0305 0.0073 0.045 0.016
MRL/MpJ f 0.081 0.0051 0.0912 0.0708
NOD/ShiLtJ f 0.0655 0.0051 0.0757 0.0553
NON/ShiLtJ f 0.0673 0.0059 0.0791 0.0555
NOR/LtJ f 0.0545 0.0051 0.0647 0.0443
NZW/LacJ f 0.0745 0.0051 0.0847 0.0643
PL/J f 0.0323 0.0059 0.0441 0.0205
PWK/PhJ f 0.0222 0.0051 0.0325 0.012
RIIIS/J f 0.0305 0.0051 0.0407 0.0203
SEA/GnJ f 0.0892 0.0051 0.0995 0.079
SJL/J f 0.0892 0.0051 0.0995 0.079
SM/J f 0.0335 0.0073 0.048 0.019
SWR/J f 0.0667 0.0051 0.077 0.0565
WSB/EiJ f 0.014 0.0059 0.0258 0.0022




  GWAS USING LINEAR MIXED MODELS