Project measure / variable:   Harrill1   pct_liver_ctrl

ID, description, units MPD:39507   pct_liver_ctrl   liver weight as percentage of body weight   [%]  control  
isoniazid study
Data set, strains Harrill1   inbred   34 strains     sex: f     age: 8-10wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Harrill1 - liver weight as percentage of body weight control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested34 strains
Mean of the strain means4.01   %
Median of the strain means4.01   %
SD of the strain means± 0.408
Coefficient of variation (CV)0.102
Min–max range of strain means3.15   –   5.11   %
Mean sample size per strain4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 33 21.9122 0.664 7.07 < 0.0001
Residuals 102 9.5798 0.0939


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.43 0.949   4 0.475 0.276 2.71, 4.82 -1.43
A/J f 3.75 0.229   4 0.114 0.0609 3.53, 3.99 -0.65
AKR/J f 4.43 0.175   4 0.0875 0.0395 4.17, 4.52 1.02
BALB/cJ f 4.19 0.246   4 0.123 0.0586 3.98, 4.52 0.43
BTBR T+ Itpr3tf/J f 4.25 0.176   4 0.0882 0.0415 4.09, 4.47 0.58
BUB/BnJ f 4.59 0.418   4 0.209 0.091 4.25, 5.2 1.41
C3H/HeJ f 4.34 0.0943   4 0.0471 0.0217 4.25, 4.45 0.8
C57BL/6J f 4.15 0.342   4 0.171 0.0823 3.69, 4.48 0.33
C57BLKS/J f 4.36 0.141   4 0.0703 0.0323 4.15, 4.46 0.85
C57BR/cdJ f 4.12 0.394   4 0.197 0.0958 3.76, 4.54 0.26
C58/J f 4.2 0.282   4 0.141 0.0672 3.91, 4.52 0.46
CBA/J f 4.17 0.0737   4 0.0368 0.0177 4.08, 4.25 0.38
CE/J f 4.02 0.23   4 0.115 0.0573 3.81, 4.34 0.02
DBA/2J f 4.12 0.219   4 0.11 0.0533 3.81, 4.33 0.26
FVB/NJ f 4.13 0.164   4 0.082 0.0397 3.94, 4.32 0.29
I/LnJ f 3.95 0.295   4 0.148 0.0748 3.68, 4.22 -0.16
KK/HlJ f 3.5 0.333   4 0.167 0.0953 3.22, 3.94 -1.26
LG/J f 3.97 0.322   4 0.161 0.0811 3.56, 4.31 -0.11
LP/J f 3.15 0.197   4 0.0984 0.0625 2.92, 3.4 -2.12
MA/MyJ f 3.72 0.39   4 0.195 0.105 3.27, 4.22 -0.72
MRL/MpJ f 3.93 0.502   4 0.251 0.128 3.64, 4.68 -0.2
NOD/ShiLtJ f 3.92 0.165   4 0.0827 0.0423 3.67, 4.02 -0.23
NON/ShiLtJ f 3.72 0.213   4 0.107 0.0573 3.42, 3.91 -0.72
NOR/LtJ f 3.99 0.258   4 0.129 0.0646 3.75, 4.35 -0.06
NZW/LacJ f 3.82 0.236   4 0.118 0.0618 3.64, 4.15 -0.47
P/J f 5.11 0.145   4 0.0727 0.0284 4.98, 5.31 2.69
PL/J f 3.17 0.261   4 0.131 0.0825 2.83, 3.39 -2.07
PWK/PhJ f 4.54 0.243   4 0.122 0.0537 4.24, 4.8 1.29
RIIIS/J f 3.94 0.302   4 0.151 0.0767 3.69, 4.38 -0.18
SEA/GnJ f 4.0 0.211   4 0.105 0.0526 3.77, 4.27 -0.03
SJL/J f 3.79 0.317   4 0.158 0.0835 3.32, 4.01 -0.55
SM/J f 4.28 0.0714   4 0.0357 0.0167 4.2, 4.36 0.65
SWR/J f 4.37 0.195   4 0.0977 0.0448 4.18, 4.62 0.87
WSB/EiJ f 3.34 0.248   4 0.124 0.0743 3.04, 3.59 -1.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4325 0.1532 3.7364 3.1286
A/J f 3.755 0.1532 4.0589 3.4511
AKR/J f 4.4325 0.1532 4.7364 4.1286
BALB/cJ f 4.1925 0.1532 4.4964 3.8886
BTBR T+ Itpr3tf/J f 4.245 0.1532 4.5489 3.9411
BUB/BnJ f 4.595 0.1532 4.8989 4.2911
C3H/HeJ f 4.3375 0.1532 4.6414 4.0336
C57BL/6J f 4.1525 0.1532 4.4564 3.8486
C57BLKS/J f 4.355 0.1532 4.6589 4.0511
C57BR/cdJ f 4.115 0.1532 4.4189 3.8111
C58/J f 4.1975 0.1532 4.5014 3.8936
CBA/J f 4.1675 0.1532 4.4714 3.8636
CE/J f 4.015 0.1532 4.3189 3.7111
DBA/2J f 4.115 0.1532 4.4189 3.8111
FVB/NJ f 4.1325 0.1532 4.4364 3.8286
I/LnJ f 3.945 0.1532 4.2489 3.6411
KK/HlJ f 3.495 0.1532 3.7989 3.1911
LG/J f 3.9725 0.1532 4.2764 3.6686
LP/J f 3.1475 0.1532 3.4514 2.8436
MA/MyJ f 3.7225 0.1532 4.0264 3.4186
MRL/MpJ f 3.9275 0.1532 4.2314 3.6236
NOD/ShiLtJ f 3.915 0.1532 4.2189 3.6111
NON/ShiLtJ f 3.72 0.1532 4.0239 3.4161
NOR/LtJ f 3.99 0.1532 4.2939 3.6861
NZW/LacJ f 3.82 0.1532 4.1239 3.5161
P/J f 5.11 0.1532 5.4139 4.8061
PL/J f 3.17 0.1532 3.4739 2.8661
PWK/PhJ f 4.535 0.1532 4.8389 4.2311
RIIIS/J f 3.945 0.1532 4.2489 3.6411
SEA/GnJ f 4.005 0.1532 4.3089 3.7011
SJL/J f 3.79 0.1532 4.0939 3.4861
SM/J f 4.2825 0.1532 4.5864 3.9786
SWR/J f 4.365 0.1532 4.6689 4.0611
WSB/EiJ f 3.34 0.1532 3.6439 3.0361




  GWAS USING LINEAR MIXED MODELS