Project measure / variable:   Harrill1   liver_trt

ID, description, units MPD:39506   liver_trt   liver weight   [g]  isoniazid  
isoniazid study
Data set, strains Harrill1   inbred   33 strains     sex: f     age: 8-10wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Harrill1 - liver weight isoniazid



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested33 strains
Mean of the strain means0.865   g
Median of the strain means0.832   g
SD of the strain means± 0.251
Coefficient of variation (CV)0.290
Min–max range of strain means0.447   –   1.49   g
Mean sample size per strain3.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 32 7.1652 0.2239 25.6939 < 0.0001
Residuals 88 0.7669 0.0087


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.663 0.0928   4 0.0464 0.14 0.553, 0.743 -0.8
A/J f 0.767 0.0467   2   0.033 0.0608 0.734, 0.8 -0.39
AKR/J f 1.16 0.0885   4 0.0443 0.0766 1.06, 1.24 1.18
BALB/cJ f 0.892 0.0267   4 0.0134 0.03 0.854, 0.916 0.11
BTBR T+ Itpr3tf/J f 1.27 0.0902   4 0.0451 0.071 1.14, 1.34 1.61
BUB/BnJ f 1.07 0.0771   4 0.0386 0.0721 0.958, 1.13 0.82
C3H/HeJ f 0.832 0.144   4 0.072 0.173 0.631, 0.967 -0.13
C57BL/6J f 0.797 0.0561   4 0.028 0.0703 0.759, 0.88 -0.27
C57BLKS/J f 0.813 0.0477   4 0.0238 0.0587 0.753, 0.866 -0.21
C57BR/cdJ f 0.83 0.128   4 0.0639 0.154 0.703, 0.985 -0.14
C58/J f 0.644 0.0466   4 0.0233 0.0724 0.586, 0.689 -0.88
CBA/J f 0.969 0.0412   4 0.0206 0.0425 0.908, 0.999 0.41
CE/J f 0.839 0.081   4 0.0405 0.0965 0.725, 0.916 -0.1
DBA/2J f 0.867 0.0743   4 0.0371 0.0857 0.761, 0.92 0.01
FVB/NJ f 0.833 0.069   4 0.0345 0.0829 0.753, 0.919 -0.13
I/LnJ f 0.721 0.137   4 0.0684 0.19 0.594, 0.869 -0.57
KK/HlJ f 0.958 0.0739   4 0.0369 0.0771 0.849, 1.01 0.37
LG/J f 1.49 0.0802   3 0.0463 0.0537 1.41, 1.57 2.49
LP/J f 0.581 0.0437   3 0.0252 0.0752 0.546, 0.63 -1.13
MA/MyJ f 0.755 0.103   2   0.073 0.137 0.682, 0.828 -0.44
MRL/MpJ f 1.37 0.0699   4 0.035 0.0511 1.3, 1.45 2.01
NOD/ShiLtJ f 0.869 0.0952   4 0.0476 0.11 0.76, 0.987 0.02
NON/ShiLtJ f 0.808 0.086   3 0.0497 0.106 0.722, 0.894 -0.23
NOR/LtJ f 0.894 0.101   4 0.0507 0.113 0.764, 1.01 0.12
NZW/LacJ f 1.45 0.0995   4 0.0497 0.0689 1.31, 1.55 2.33
PL/J f 0.574 0.03   3 0.0173 0.0524 0.54, 0.597 -1.16
PWK/PhJ f 0.551 0.113   4 0.0567 0.206 0.397, 0.662 -1.25
RIIIS/J f 0.627 0.0733   4 0.0366 0.117 0.534, 0.713 -0.95
SEA/GnJ f 0.958 0.208   4 0.104 0.217 0.759, 1.24 0.37
SJL/J f 0.869 0.0965   4 0.0482 0.111 0.728, 0.943 0.02
SM/J f 0.659 0.0134   2   0.0095 0.0204 0.649, 0.668 -0.82
SWR/J f 0.713 0.0793   4 0.0397 0.111 0.645, 0.82 -0.6
WSB/EiJ f 0.447 0.124   3 0.0718 0.278 0.304, 0.525 -1.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6625 0.0467 0.7553 0.5697
A/J f 0.767 0.066 0.8982 0.6358
AKR/J f 1.155 0.0467 1.2478 1.0622
BALB/cJ f 0.8918 0.0467 0.9845 0.799
BTBR T+ Itpr3tf/J f 1.27 0.0467 1.3628 1.1772
BUB/BnJ f 1.0695 0.0467 1.1623 0.9767
C3H/HeJ f 0.8323 0.0467 0.925 0.7395
C57BL/6J f 0.7975 0.0467 0.8903 0.7047
C57BLKS/J f 0.8127 0.0467 0.9055 0.72
C57BR/cdJ f 0.8295 0.0467 0.9223 0.7367
C58/J f 0.6437 0.0467 0.7365 0.551
CBA/J f 0.9685 0.0467 1.0613 0.8757
CE/J f 0.8395 0.0467 0.9323 0.7467
DBA/2J f 0.867 0.0467 0.9598 0.7742
FVB/NJ f 0.8325 0.0467 0.9253 0.7397
I/LnJ f 0.721 0.0467 0.8138 0.6282
KK/HlJ f 0.9582 0.0467 1.051 0.8655
LG/J f 1.4933 0.0539 1.6004 1.3862
LP/J f 0.581 0.0539 0.6881 0.4739
MA/MyJ f 0.755 0.066 0.8862 0.6238
MRL/MpJ f 1.3675 0.0467 1.4603 1.2747
NOD/ShiLtJ f 0.8693 0.0467 0.962 0.7765
NON/ShiLtJ f 0.808 0.0539 0.9151 0.7009
NOR/LtJ f 0.894 0.0467 0.9868 0.8012
NZW/LacJ f 1.445 0.0467 1.5378 1.3522
PL/J f 0.574 0.0539 0.6811 0.4669
PWK/PhJ f 0.551 0.0467 0.6438 0.4582
RIIIS/J f 0.6273 0.0467 0.72 0.5345
SEA/GnJ f 0.9585 0.0467 1.0513 0.8657
SJL/J f 0.8688 0.0467 0.9615 0.776
SM/J f 0.6585 0.066 0.7897 0.5273
SWR/J f 0.7135 0.0467 0.8063 0.6207
WSB/EiJ f 0.4473 0.0539 0.5544 0.3402




  GWAS USING LINEAR MIXED MODELS