Project measure / variable:   Crowley1   pct_center_d0

ID, description, units MPD:39425   pct_center_d0   center occupancy, percentage of total time   [%]  on day 0  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - center occupancy, percentage of total time on day 0



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means6.44   %
Median of the strain means5.67   %
SD of the strain means± 4.07
Coefficient of variation (CV)0.632
Min–max range of strain means0.0300   –   14.2   %
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 2592.1036 99.6963 9.5471 < 0.0001
Residuals 132 1378.4153 10.4425


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.03 0.0849   8 0.03 2.83 -1.57
A/J m 0.142 0.318   5 0.142 2.24 -1.55
AKR/J m 6.94 5.26   5 2.35 0.758 1.43, 15.0 0.12
BALB/cByJ m 2.03 2.74   5 1.22 1.35 -1.08
BTBR T+ Itpr3tf/J m 4.33 2.31   8 0.816 0.532 0.32, 7.16 -0.52
C3H/HeJ m 4.81 1.51   5 0.676 0.314 3.06, 6.45 -0.4
C57BL/6J m 10.8 3.31   5 1.48 0.305 6.63, 13.9 1.07
C57BLKS/J m 6.72 3.14   5 1.4 0.467 3.7, 11.5 0.07
CAST/EiJ m 7.54 1.86   5 0.832 0.247 5.58, 9.32 0.27
CBA/J m 8.96 4.13   5 1.85 0.461 3.75, 14.4 0.62
DBA/2J m 3.3 2.1   9 0.701 0.637 0.38, 6.74 -0.77
DDY/JclSidSeyFrkJ m 6.35 3.27   7 1.24 0.516 1.04, 9.42 -0.02
FVB/NJ m 12.0 1.21   5 0.54 0.1 10.1, 13.4 1.37
KK/HlJ m 6.33 2.35   7 0.888 0.371 2.23, 9.28 -0.03
MA/MyJ m 12.5 4.73   6 1.93 0.378 5.66, 17.9 1.49
MOLF/EiJ m 11.6 7.39   5 3.31 0.64 5.79, 22.8 1.27
MRL/MpJ m 5.67 1.56   5 0.697 0.275 3.92, 7.26 -0.19
MSM/MsJ m 1.85 1.16   6 0.474 0.626 0.63, 3.94 -1.13
NOD/ShiLtJ m 13.2 6.37   5 2.85 0.481 4.11, 19.4 1.66
NON/ShiLtJ m 10.6 5.01   8 1.77 0.475 6.1, 17.1 1.02
NZL/LtJ m 5.66 2.04   8 0.72 0.36 2.69, 9.23 -0.19
NZO/HlLtJ m 1.1 0.98   4 0.49 0.887 0.31, 2.38 -1.31
NZW/LacJ m 4.61 2.52   5 1.13 0.547 1.41, 7.67 -0.45
PWK/PhJ m 4.24 0.774   5 0.346 0.183 3.34, 5.25 -0.54
SJL/J m 4.01 4.16   5 1.86 1.04 1.19, 11.2 -0.6
SM/J m 14.2 3.03   8 1.07 0.214 9.62, 17.4 1.91
WSB/EiJ m 4.31 1.5   5 0.672 0.348 2.28, 6.16 -0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.03 1.1425 2.29 0.0
A/J m 0.142 1.4452 3.0007 0.0
AKR/J m 6.942 1.4452 9.8007 4.0833
BALB/cByJ m 2.026 1.4452 4.8847 0.0
BTBR T+ Itpr3tf/J m 4.335 1.1425 6.595 2.075
C3H/HeJ m 4.806 1.4452 7.6647 1.9473
C57BL/6J m 10.84 1.4452 13.6987 7.9813
C57BLKS/J m 6.724 1.4452 9.5827 3.8653
CAST/EiJ m 7.538 1.4452 10.3967 4.6793
CBA/J m 8.96 1.4452 11.8187 6.1013
DBA/2J m 3.3 1.0772 5.4307 1.1693
DDY/JclSidSeyFrkJ m 6.3471 1.2214 8.7632 3.9311
FVB/NJ m 12.02 1.4452 14.8787 9.1613
KK/HlJ m 6.3271 1.2214 8.7432 3.9111
MA/MyJ m 12.5017 1.3193 15.1113 9.8921
MOLF/EiJ m 11.554 1.4452 14.4127 8.6953
MRL/MpJ m 5.67 1.4452 8.5287 2.8113
MSM/MsJ m 1.8533 1.3193 4.4629 0.0
NOD/ShiLtJ m 13.222 1.4452 16.0807 10.3633
NON/ShiLtJ m 10.5538 1.1425 12.8137 8.2938
NZL/LtJ m 5.66 1.1425 7.92 3.4
NZO/HlLtJ m 1.105 1.6157 4.3011 0.0
NZW/LacJ m 4.61 1.4452 7.4687 1.7513
PWK/PhJ m 4.238 1.4452 7.0967 1.3793
SJL/J m 4.012 1.4452 6.8707 1.1533
SM/J m 14.19 1.1425 16.45 11.93
WSB/EiJ m 4.314 1.4452 7.1727 1.4553




  GWAS USING LINEAR MIXED MODELS