Phenotype measure:   Crowley1   stereotypy_d30

ID, description, units MPD:39422   stereotypy_d30   repetitive behavior, breaking of same beam, 60 min test   [n]  on day 30
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Crowley1 - repetitive behavior, breaking of same beam, 60 min test on day 30



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means3057   n
Median of the strain means2773   n
SD of the strain means± 1686
Coefficient of variation (CV)0.551
Min–max range of strain means623   –   6418   n
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 416343332.1037 16013205.0809 14.9084 < 0.0001
Residuals 132 141781625.7202 1074103.2252


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 623.0 340.0   8 120.0 0.547 230.0, 1205.0 -1.44
A/J m 1186.0 333.0   5 149.0 0.281 856.0, 1635.0 -1.11
AKR/J m 2773.0 903.0   5 404.0 0.326 1639.0, 4091.0 -0.17
BALB/cByJ m 2573.0 966.0   5 432.0 0.375 1623.0, 4160.0 -0.29
BTBR T+ Itpr3tf/J m 2680.0 1067.0   8 377.0 0.398 1135.0, 3970.0 -0.22
C3H/HeJ m 1299.0 375.0   5 168.0 0.288 859.0, 1720.0 -1.04
C57BL/6J m 3617.0 1126.0   5 504.0 0.311 2588.0, 5168.0 0.33
C57BLKS/J m 2802.0 635.0   5 284.0 0.227 1967.0, 3721.0 -0.15
CAST/EiJ m 6418.0 2609.0   5 1167.0 0.407 3007.0, 10334.0 1.99
CBA/J m 3653.0 647.0   5 289.0 0.177 2975.0, 4426.0 0.35
DBA/2J m 4785.0 796.0   9 265.0 0.166 3650.0, 5750.0 1.03
DDY/JclSidSeyFrkJ m 2220.0 1506.0   7 569.0 0.678 535.0, 5280.0 -0.5
FVB/NJ m 6101.0 812.0   5 363.0 0.133 5232.0, 7435.0 1.81
KK/HlJ m 2706.0 562.0   7 213.0 0.208 1990.0, 3576.0 -0.21
MA/MyJ m 5127.0 1144.0   6 467.0 0.223 3980.0, 7169.0 1.23
MOLF/EiJ m 1336.0 419.0   5 187.0 0.313 886.0, 1914.0 -1.02
MRL/MpJ m 3898.0 187.0   5 83.6 0.048 3653.0, 4162.0 0.5
MSM/MsJ m 1371.0 812.0   6 331.0 0.592 655.0, 2621.0 -1.0
NOD/ShiLtJ m 5727.0 522.0   5 234.0 0.0912 5283.0, 6469.0 1.58
NON/ShiLtJ m 4608.0 2419.0   8 855.0 0.525 2294.0, 8923.0 0.92
NZL/LtJ m 1833.0 510.0   8 180.0 0.278 905.0, 2711.0 -0.73
NZO/HlLtJ m 681.0 361.0   4 181.0 0.53 326.0, 1034.0 -1.41
NZW/LacJ m 1725.0 416.0   5 186.0 0.241 1152.0, 2287.0 -0.79
PWK/PhJ m 1036.0 399.0   5 179.0 0.386 728.0, 1731.0 -1.2
SJL/J m 3616.0 719.0   5 321.0 0.199 2475.0, 4428.0 0.33
SM/J m 3880.0 955.0   8 338.0 0.246 2946.0, 5978.0 0.49
WSB/EiJ m 4268.0 613.0   5 274.0 0.144 3187.0, 4709.0 0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 622.625 366.419 1347.4381 0.0
A/J m 1185.8 463.4875 2102.624 268.976
AKR/J m 2773.2 463.4875 3690.024 1856.376
BALB/cByJ m 2573.4 463.4875 3490.224 1656.576
BTBR T+ Itpr3tf/J m 2679.5 366.419 3404.3131 1954.6869
C3H/HeJ m 1298.8 463.4875 2215.624 381.976
C57BL/6J m 3617.0 463.4875 4533.824 2700.176
C57BLKS/J m 2802.2 463.4875 3719.024 1885.376
CAST/EiJ m 6417.6 463.4875 7334.424 5500.776
CBA/J m 3652.6 463.4875 4569.424 2735.776
DBA/2J m 4785.3333 345.4632 5468.6936 4101.973
DDY/JclSidSeyFrkJ m 2220.4286 391.7184 2995.2863 1445.5708
FVB/NJ m 6101.2 463.4875 7018.024 5184.376
KK/HlJ m 2706.4286 391.7184 3481.2863 1931.5708
MA/MyJ m 5126.6667 423.1042 5963.6087 4289.7246
MOLF/EiJ m 1336.4 463.4875 2253.224 419.576
MRL/MpJ m 3897.6 463.4875 4814.424 2980.776
MSM/MsJ m 1370.6667 423.1042 2207.6087 533.7246
NOD/ShiLtJ m 5727.4 463.4875 6644.224 4810.576
NON/ShiLtJ m 4608.0 366.419 5332.8131 3883.1869
NZL/LtJ m 1832.625 366.419 2557.4381 1107.8119
NZO/HlLtJ m 681.0 518.1948 1706.0404 0.0
NZW/LacJ m 1725.2 463.4875 2642.024 808.376
PWK/PhJ m 1035.8 463.4875 1952.624 118.976
SJL/J m 3616.4 463.4875 4533.224 2699.576
SM/J m 3879.625 366.419 4604.4381 3154.8119
WSB/EiJ m 4268.0 463.4875 5184.824 3351.176




  GWAS USING LINEAR MIXED MODELS