Phenotype measure:   Crowley1   stereotypy_d0

ID, description, units MPD:39421   stereotypy_d0   repetitive behavior, breaking of same beam, 60 min test   [n]  on day 0
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Crowley1 - repetitive behavior, breaking of same beam, 60 min test on day 0



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means4678   n
Median of the strain means4728   n
SD of the strain means± 2005
Coefficient of variation (CV)0.429
Min–max range of strain means1374   –   8538   n
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 608369503.2547 23398827.0483 21.0999 < 0.0001
Residuals 132 146382320.2548 1108956.9716


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1379.0 725.0   8 256.0 0.526 249.0, 2548.0 -1.65
A/J m 1924.0 1219.0   5 545.0 0.633 610.0, 3920.0 -1.37
AKR/J m 5481.0 1811.0   5 810.0 0.33 2830.0, 7693.0 0.4
BALB/cByJ m 4107.0 1626.0   5 727.0 0.396 2048.0, 6108.0 -0.29
BTBR T+ Itpr3tf/J m 5139.0 1767.0   8 625.0 0.344 2012.0, 7033.0 0.23
C3H/HeJ m 2978.0 434.0   5 194.0 0.146 2485.0, 3488.0 -0.85
C57BL/6J m 7377.0 776.0   5 347.0 0.105 6687.0, 8503.0 1.35
C57BLKS/J m 4791.0 690.0   5 309.0 0.144 4023.0, 5452.0 0.06
CAST/EiJ m 5557.0 1125.0   5 503.0 0.202 4135.0, 6961.0 0.44
CBA/J m 4949.0 919.0   5 411.0 0.186 3967.0, 6101.0 0.13
DBA/2J m 4600.0 660.0   9 220.0 0.143 3406.0, 5457.0 -0.04
DDY/JclSidSeyFrkJ m 3784.0 841.0   7 318.0 0.222 2746.0, 4857.0 -0.45
FVB/NJ m 7887.0 803.0   5 359.0 0.102 7106.0, 8804.0 1.6
KK/HlJ m 4879.0 1717.0   7 649.0 0.352 2765.0, 8036.0 0.1
MA/MyJ m 8538.0 1336.0   6 546.0 0.156 7151.0, 10648.0 1.93
MOLF/EiJ m 2145.0 497.0   5 222.0 0.232 1425.0, 2736.0 -1.26
MRL/MpJ m 6310.0 915.0   5 409.0 0.145 5711.0, 7929.0 0.81
MSM/MsJ m 1374.0 336.0   6 137.0 0.245 1020.0, 1831.0 -1.65
NOD/ShiLtJ m 7107.0 1119.0   5 501.0 0.158 5804.0, 8446.0 1.21
NON/ShiLtJ m 6585.0 1003.0   8 355.0 0.152 4450.0, 7894.0 0.95
NZL/LtJ m 4728.0 1111.0   8 393.0 0.235 3144.0, 6738.0 0.02
NZO/HlLtJ m 1864.0 638.0   4 319.0 0.343 1079.0, 2642.0 -1.4
NZW/LacJ m 3631.0 634.0   5 284.0 0.175 3098.0, 4685.0 -0.52
PWK/PhJ m 3736.0 711.0   5 318.0 0.19 2916.0, 4578.0 -0.47
SJL/J m 3884.0 882.0   5 395.0 0.227 2509.0, 4977.0 -0.4
SM/J m 7409.0 730.0   8 258.0 0.0986 6792.0, 8607.0 1.36
WSB/EiJ m 4175.0 933.0   5 417.0 0.223 2968.0, 5450.0 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1379.125 372.3166 2115.604 642.646
A/J m 1923.8 470.9473 2855.3804 992.2196
AKR/J m 5480.6 470.9473 6412.1804 4549.0196
BALB/cByJ m 4106.8 470.9473 5038.3804 3175.2196
BTBR T+ Itpr3tf/J m 5138.75 372.3166 5875.229 4402.271
C3H/HeJ m 2977.8 470.9473 3909.3804 2046.2196
C57BL/6J m 7376.8 470.9473 8308.3804 6445.2196
C57BLKS/J m 4790.6 470.9473 5722.1804 3859.0196
CAST/EiJ m 5557.0 470.9473 6488.5804 4625.4196
CBA/J m 4948.6 470.9473 5880.1804 4017.0196
DBA/2J m 4600.0 351.0234 5294.359 3905.641
DDY/JclSidSeyFrkJ m 3784.1429 398.0231 4571.472 2996.8137
FVB/NJ m 7887.0 470.9473 8818.5804 6955.4196
KK/HlJ m 4879.4286 398.0231 5666.7577 4092.0994
MA/MyJ m 8538.1667 429.9141 9388.5793 7687.754
MOLF/EiJ m 2144.6 470.9473 3076.1804 1213.0196
MRL/MpJ m 6310.4 470.9473 7241.9804 5378.8196
MSM/MsJ m 1374.5 429.9141 2224.9126 524.0874
NOD/ShiLtJ m 7106.6 470.9473 8038.1804 6175.0196
NON/ShiLtJ m 6584.875 372.3166 7321.354 5848.396
NZL/LtJ m 4727.5 372.3166 5463.979 3991.021
NZO/HlLtJ m 1863.5 526.5351 2905.0385 821.9615
NZW/LacJ m 3630.6 470.9473 4562.1804 2699.0196
PWK/PhJ m 3736.0 470.9473 4667.5804 2804.4196
SJL/J m 3884.0 470.9473 4815.5804 2952.4196
SM/J m 7408.75 372.3166 8145.229 6672.271
WSB/EiJ m 4175.0 470.9473 5106.5804 3243.4196




  GWAS USING LINEAR MIXED MODELS