Project measure / variable:   Crowley1   latency_d0

ID, description, units MPD:39407   latency_d0   latency to move four paws, extrapyramidal side effects   [s]  on day 0  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure inclined screen test
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  STRAIN COMPARISON PLOT
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Crowley1 - latency to move four paws, extrapyramidal side effects on day 0



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means2.62   s
Median of the strain means2.60   s
SD of the strain means± 0.741
Coefficient of variation (CV)0.282
Min–max range of strain means1.25   –   4.38   s
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 95.3287 3.6665 1.6084 0.0436
Residuals 132 300.9103 2.2796


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 4.38 2.26   8 0.8 0.517 1.0, 8.0 2.37
A/J m 3.4 2.07   5 0.927 0.61 1.0, 6.0 1.05
AKR/J m 3.4 1.52   5 0.678 0.446 1.0, 5.0 1.05
BALB/cByJ m 2.4 1.14   5 0.51 0.475 1.0, 4.0 -0.3
BTBR T+ Itpr3tf/J m 2.38 1.92   8 0.68 0.81 -0.33
C3H/HeJ m 2.6 1.14   5 0.51 0.439 1.0, 4.0 -0.03
C57BL/6J m 3.2 1.64   5 0.735 0.513 2.0, 6.0 0.78
C57BLKS/J m 2.6 0.548   5 0.245 0.211 2.0, 3.0 -0.03
CAST/EiJ m 2.2 1.64   5 0.735 0.747 1.0, 5.0 -0.57
CBA/J m 3.4 1.14   5 0.51 0.335 2.0, 5.0 1.05
DBA/2J m 3.22 1.72   9 0.572 0.533 2.0, 7.0 0.81
DDY/JclSidSeyFrkJ m 1.86 1.57   7 0.595 0.847 -1.03
FVB/NJ m 4.0 1.0   5 0.447 0.25 3.0, 5.0 1.86
KK/HlJ m 1.57 0.976   7 0.369 0.621 -1.42
MA/MyJ m 2.17 1.17   6 0.477 0.54 1.0, 4.0 -0.61
MOLF/EiJ m 3.0 1.58   5 0.707 0.527 1.0, 5.0 0.51
MRL/MpJ m 2.2 0.447   5 0.2 0.203 2.0, 3.0 -0.57
MSM/MsJ m 2.5 1.05   6 0.428 0.42 1.0, 4.0 -0.17
NOD/ShiLtJ m 2.6 1.67   5 0.748 0.644 1.0, 5.0 -0.03
NON/ShiLtJ m 3.0 1.51   8 0.535 0.504 1.0, 5.0 0.51
NZL/LtJ m 1.5 0.926   8 0.327 0.617 -1.52
NZO/HlLtJ m 3.0 2.71   4 1.35 0.903 1.0, 7.0 0.51
NZW/LacJ m 2.4 1.67   5 0.748 0.697 1.0, 5.0 -0.3
PWK/PhJ m 2.6 1.82   5 0.812 0.699 1.0, 5.0 -0.03
SJL/J m 2.0 0.707   5 0.316 0.354 1.0, 3.0 -0.84
SM/J m 1.25 1.49   8 0.526 1.19 -1.85
WSB/EiJ m 2.0 1.22   5 0.548 0.612 1.0, 4.0 -0.84


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 4.375 0.5338 5.4309 3.3191
A/J m 3.4 0.6752 4.7357 2.0643
AKR/J m 3.4 0.6752 4.7357 2.0643
BALB/cByJ m 2.4 0.6752 3.7357 1.0643
BTBR T+ Itpr3tf/J m 2.375 0.5338 3.4309 1.3191
C3H/HeJ m 2.6 0.6752 3.9357 1.2643
C57BL/6J m 3.2 0.6752 4.5357 1.8643
C57BLKS/J m 2.6 0.6752 3.9357 1.2643
CAST/EiJ m 2.2 0.6752 3.5357 0.8643
CBA/J m 3.4 0.6752 4.7357 2.0643
DBA/2J m 3.2222 0.5033 4.2178 2.2267
DDY/JclSidSeyFrkJ m 1.8571 0.5707 2.986 0.7283
FVB/NJ m 4.0 0.6752 5.3357 2.6643
KK/HlJ m 1.5714 0.5707 2.7003 0.4426
MA/MyJ m 2.1667 0.6164 3.3859 0.9474
MOLF/EiJ m 3.0 0.6752 4.3357 1.6643
MRL/MpJ m 2.2 0.6752 3.5357 0.8643
MSM/MsJ m 2.5 0.6164 3.7193 1.2807
NOD/ShiLtJ m 2.6 0.6752 3.9357 1.2643
NON/ShiLtJ m 3.0 0.5338 4.0559 1.9441
NZL/LtJ m 1.5 0.5338 2.5559 0.4441
NZO/HlLtJ m 3.0 0.7549 4.4933 1.5067
NZW/LacJ m 2.4 0.6752 3.7357 1.0643
PWK/PhJ m 2.6 0.6752 3.9357 1.2643
SJL/J m 2.0 0.6752 3.3357 0.6643
SM/J m 1.25 0.5338 2.3059 0.1941
WSB/EiJ m 2.0 0.6752 3.3357 0.6643




  GWAS USING LINEAR MIXED MODELS