Project measure / variable:   Gupta2   adj_area_kidneyR

ID, description, units MPD:39213   adj_area_kidneyR   normalized kidney planar surface area   [mm2/g]  right  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure organ dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Gupta2 - normalized kidney planar surface area right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3.16   mm2/g 3.05   mm2/g
Median of the strain means3.23   mm2/g 2.97   mm2/g
SD of the strain means± 0.281 ± 0.324
Coefficient of variation (CV)0.0888 0.106
Min–max range of strain means2.60   –   3.48   mm2/g 2.58   –   3.64   mm2/g
Mean sample size per strain12.9   mice 14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0265 1.0265 5.3396 0.0216
strain 9 20.9724 2.3303 12.1217 < 0.0001
sex:strain 9 1.617 0.1797 0.9346 0.4955
Residuals 254 48.8286 0.1922


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 3.48 0.33   13 0.0916 0.0948 3.01, 4.07 1.14
BXH10/TyJ m 3.64 0.336   14 0.0897 0.0923 2.95, 4.13 1.82
BXH11/TyJ f 3.46 0.388   7 0.147 0.112 3.09, 4.17 1.07
BXH11/TyJ m 3.35 0.244   6 0.0996 0.0727 2.95, 3.66 0.93
BXH14/TyJ f 3.24 0.548   15 0.141 0.169 2.78, 5.11 0.29
BXH14/TyJ m 3.17 0.364   16 0.091 0.115 2.64, 4.0 0.37
BXH19/TyJ f 2.9 0.36   23 0.0752 0.124 2.12, 3.51 -0.93
BXH19/TyJ m 2.86 0.279   11 0.0841 0.0974 2.36, 3.28 -0.59
BXH2/TyJ f 3.21 0.323   8 0.114 0.101 2.63, 3.62 0.18
BXH2/TyJ m 2.92 0.355   12 0.103 0.122 2.28, 3.43 -0.4
BXH4/TyJ f 3.18 0.335   15 0.0866 0.106 2.7, 3.85 0.07
BXH4/TyJ m 3.02 0.39   11 0.118 0.129 2.46, 3.67 -0.09
BXH6/TyJ f 3.29 0.472   15 0.122 0.143 2.24, 4.37 0.46
BXH6/TyJ m 2.87 0.88   15 0.227 0.307 -0.56
BXH7/TyJ f 2.89 0.29   9 0.0967 0.1 2.52, 3.41 -0.96
BXH7/TyJ m 2.74 0.395   16 0.0987 0.144 2.02, 3.47 -0.96
BXH8/TyJ f 2.6 0.376   10 0.119 0.144 1.98, 3.24 -2.0
BXH8/TyJ m 2.58 0.525   19 0.12 0.203 1.74, 4.15 -1.45
BXH9/TyJ f 3.35 0.451   18 0.106 0.134 2.67, 4.34 0.68
BXH9/TyJ m 3.35 0.398   21 0.0868 0.119 2.72, 3.97 0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 3.4823 0.1216 3.7218 3.2428
BXH10/TyJ m 3.6379 0.1172 3.8686 3.4071
BXH11/TyJ f 3.4571 0.1657 3.7835 3.1308
BXH11/TyJ m 3.355 0.179 3.7075 3.0025
BXH14/TyJ f 3.2387 0.1132 3.4616 3.0157
BXH14/TyJ m 3.1706 0.1096 3.3865 2.9548
BXH19/TyJ f 2.9026 0.0914 3.0827 2.7226
BXH19/TyJ m 2.8645 0.1322 3.1249 2.6042
BXH2/TyJ f 3.2075 0.155 3.5128 2.9022
BXH2/TyJ m 2.9225 0.1266 3.1718 2.6732
BXH4/TyJ f 3.1767 0.1132 3.3996 2.9537
BXH4/TyJ m 3.0209 0.1322 3.2813 2.7606
BXH6/TyJ f 3.2933 0.1132 3.5163 3.0704
BXH6/TyJ m 2.8653 0.1132 3.0883 2.6424
BXH7/TyJ f 2.8878 0.1462 3.1756 2.6
BXH7/TyJ m 2.7394 0.1096 2.9552 2.5235
BXH8/TyJ f 2.602 0.1387 2.8751 2.3289
BXH8/TyJ m 2.5847 0.1006 2.7828 2.3866
BXH9/TyJ f 3.3544 0.1033 3.558 3.1509
BXH9/TyJ m 3.3514 0.0957 3.5399 3.163


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 3.5601 0.0844 3.7264 3.3938
BXH11/TyJ both 3.4061 0.122 3.6463 3.1659
BXH14/TyJ both 3.2046 0.0788 3.3598 3.0495
BXH19/TyJ both 2.8836 0.0804 3.0418 2.7253
BXH2/TyJ both 3.065 0.1001 3.2621 2.8679
BXH4/TyJ both 3.0988 0.087 3.2702 2.9274
BXH6/TyJ both 3.0793 0.08 3.237 2.9217
BXH7/TyJ both 2.8136 0.0913 2.9935 2.6337
BXH8/TyJ both 2.5934 0.0856 2.762 2.4247
BXH9/TyJ both 3.3529 0.0704 3.4916 3.2143




  GWAS USING LINEAR MIXED MODELS