Project measure / variable:   Gupta2   pct_kidneyL

ID, description, units MPD:39205   pct_kidneyL   percent kidney weight to body weight   [%]  left  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Gupta2 - percent kidney weight to body weight left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means0.476   % 0.469   %
Median of the strain means0.477   % 0.474   %
SD of the strain means± 0.0366 ± 0.0514
Coefficient of variation (CV)0.0770 0.109
Min–max range of strain means0.414   –   0.540   % 0.385   –   0.535   %
Mean sample size per strain12.9   mice 14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0038 0.0038 0.6359 0.4259
strain 9 0.3911 0.0435 7.2708 < 0.0001
sex:strain 9 0.0606 0.0067 1.1274 0.3437
Residuals 254 1.518 0.006


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 0.5 0.0631   13 0.0175 0.126 0.412, 0.639 0.66
BXH10/TyJ m 0.527 0.0676   14 0.0181 0.128 0.411, 0.638 1.12
BXH11/TyJ f 0.476 0.0395   7 0.0149 0.0829 0.417, 0.526 0.01
BXH11/TyJ m 0.535 0.0362   6 0.0148 0.0676 0.483, 0.59 1.28
BXH14/TyJ f 0.48 0.151   15 0.039 0.314 0.34, 1.0 0.11
BXH14/TyJ m 0.436 0.122   16 0.0306 0.281 -0.65
BXH19/TyJ f 0.434 0.075   23 0.0156 0.173 0.32, 0.627 -1.14
BXH19/TyJ m 0.385 0.0566   11 0.0171 0.147 0.271, 0.472 -1.64
BXH2/TyJ f 0.472 0.0769   8 0.0272 0.163 0.34, 0.565 -0.1
BXH2/TyJ m 0.457 0.0448   12 0.0129 0.0981 0.368, 0.505 -0.24
BXH4/TyJ f 0.54 0.107   15 0.0277 0.199 0.412, 0.791 1.75
BXH4/TyJ m 0.514 0.0809   11 0.0244 0.157 0.4, 0.721 0.87
BXH6/TyJ f 0.478 0.0581   15 0.015 0.122 0.357, 0.568 0.06
BXH6/TyJ m 0.469 0.0883   15 0.0228 0.188 0.282, 0.667 -0.01
BXH7/TyJ f 0.414 0.0429   9 0.0143 0.103 0.346, 0.462 -1.69
BXH7/TyJ m 0.398 0.0637   16 0.0159 0.16 0.273, 0.504 -1.39
BXH8/TyJ f 0.511 0.0455   10 0.0144 0.089 0.452, 0.586 0.96
BXH8/TyJ m 0.493 0.0615   19 0.0141 0.125 0.348, 0.605 0.46
BXH9/TyJ f 0.453 0.0495   18 0.0117 0.109 0.371, 0.554 -0.62
BXH9/TyJ m 0.48 0.0475   21 0.0104 0.099 0.406, 0.564 0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 0.4996 0.0214 0.5418 0.4574
BXH10/TyJ m 0.5271 0.0207 0.5678 0.4864
BXH11/TyJ f 0.4764 0.0292 0.534 0.4189
BXH11/TyJ m 0.535 0.0316 0.5972 0.4728
BXH14/TyJ f 0.4802 0.02 0.5195 0.4409
BXH14/TyJ m 0.4362 0.0193 0.4742 0.3981
BXH19/TyJ f 0.4341 0.0161 0.4659 0.4024
BXH19/TyJ m 0.3846 0.0233 0.4305 0.3387
BXH2/TyJ f 0.4719 0.0273 0.5257 0.418
BXH2/TyJ m 0.4571 0.0223 0.501 0.4131
BXH4/TyJ f 0.5395 0.02 0.5788 0.5002
BXH4/TyJ m 0.5144 0.0233 0.5603 0.4685
BXH6/TyJ f 0.4782 0.02 0.5175 0.4389
BXH6/TyJ m 0.4692 0.02 0.5085 0.4299
BXH7/TyJ f 0.4144 0.0258 0.4652 0.3637
BXH7/TyJ m 0.3978 0.0193 0.4359 0.3598
BXH8/TyJ f 0.5114 0.0244 0.5595 0.4633
BXH8/TyJ m 0.4934 0.0177 0.5283 0.4585
BXH9/TyJ f 0.4528 0.0182 0.4887 0.4169
BXH9/TyJ m 0.4798 0.0169 0.513 0.4465


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 0.5133 0.0149 0.5427 0.484
BXH11/TyJ both 0.5057 0.0215 0.5481 0.4634
BXH14/TyJ both 0.4582 0.0139 0.4856 0.4308
BXH19/TyJ both 0.4094 0.0142 0.4373 0.3815
BXH2/TyJ both 0.4645 0.0176 0.4992 0.4297
BXH4/TyJ both 0.5269 0.0153 0.5572 0.4967
BXH6/TyJ both 0.4737 0.0141 0.5015 0.4459
BXH7/TyJ both 0.4061 0.0161 0.4378 0.3744
BXH8/TyJ both 0.5024 0.0151 0.5321 0.4727
BXH9/TyJ both 0.4663 0.0124 0.4907 0.4418




  GWAS USING LINEAR MIXED MODELS