Project measure / variable:   Gupta1   adj_area_kidneyL

ID, description, units MPD:39112   adj_area_kidneyL   normalized kidney planar surface area   [mm2/g]  left  
Data set, strains Gupta1   inbred   7 strains     sex: both     age: postnatal d1
Procedure organ dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Gupta1 - normalized kidney planar surface area left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains7 strains
Mean of the strain means3.75   mm2/g 3.81   mm2/g
Median of the strain means3.76   mm2/g 3.90   mm2/g
SD of the strain means± 0.347 ± 0.218
Coefficient of variation (CV)0.0924 0.0572
Min–max range of strain means3.27   –   4.41   mm2/g 3.39   –   3.97   mm2/g
Mean sample size per strain7.9   mice 9.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0328 0.0328 0.2782 0.599
strain 6 4.2637 0.7106 6.0288 < 0.0001
sex:strain 6 1.4905 0.2484 2.1076 0.0581
Residuals 108 12.73 0.1179


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.52 0.144   10 0.0455 0.0409 3.25, 3.67 -0.67
129S1/SvImJ m 3.39 0.282   7 0.107 0.0832 3.21, 4.01 -1.92
AKR/J f 3.77 0.288   4 0.144 0.0763 3.36, 4.01 0.05
AKR/J m 3.97 0.169   15 0.0435 0.0425 3.64, 4.21 0.74
CBA/J f 3.79 0.478   4 0.239 0.126 3.37, 4.3 0.11
CBA/J m 3.9 0.332   9 0.111 0.0853 3.36, 4.33 0.42
DBA/2J f 4.41 0.15   5 0.0669 0.0339 4.18, 4.6 1.9
DBA/2J m 3.88 0.15   2   0.106 0.0386 3.77, 3.99 0.33
FVB/NJ f 3.75 0.409   18 0.0965 0.109 3.08, 5.02 -0.01
FVB/NJ m 3.63 0.328   20 0.0734 0.0905 3.1, 4.57 -0.82
SJL/J f 3.27 0.733   2   0.518 0.224 2.76, 3.79 -1.39
SJL/J m 3.93 0.2   3 0.115 0.0508 3.7, 4.08 0.56
SM/J f 3.76 0.342   12 0.0987 0.0908 3.17, 4.24 0.02
SM/J m 3.96 0.542   11 0.163 0.137 3.3, 5.22 0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.5186 0.1086 3.7338 3.3034
129S1/SvImJ m 3.3941 0.1298 3.6513 3.1369
AKR/J f 3.7733 0.1717 4.1136 3.433
AKR/J m 3.9726 0.0886 4.1483 3.7969
CBA/J f 3.7946 0.1717 4.1349 3.4543
CBA/J m 3.8967 0.1144 4.1236 3.6699
DBA/2J f 4.4052 0.1535 4.7096 4.1009
DBA/2J m 3.8796 0.2428 4.3608 3.3984
FVB/NJ f 3.7538 0.0809 3.9142 3.5934
FVB/NJ m 3.6282 0.0768 3.7803 3.476
SJL/J f 3.2747 0.2428 3.7559 2.7935
SJL/J m 3.9278 0.1982 4.3207 3.5349
SM/J f 3.7631 0.0991 3.9596 3.5667
SM/J m 3.9594 0.1035 4.1646 3.7543


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4563 0.0846 3.624 3.2886
AKR/J both 3.873 0.0966 4.0644 3.6815
CBA/J both 3.8457 0.1032 4.0501 3.6412
DBA/2J both 4.1424 0.1436 4.4271 3.8577
FVB/NJ both 3.691 0.0558 3.8015 3.5804
SJL/J both 3.6012 0.1567 3.9118 3.2906
SM/J both 3.8613 0.0717 4.0033 3.7193




  GWAS USING LINEAR MIXED MODELS