Project measure / variable:   Gupta1   area_kidneyR

ID, description, units MPD:39111   area_kidneyR   kidney planar surface area   [mm2]  right  
Data set, strains Gupta1   inbred   8 strains     sex: both     age: postnatal d1
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Gupta1 - kidney planar surface area right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains8 strains
Mean of the strain means4.74   mm2 4.84   mm2
Median of the strain means4.48   mm2 4.79   mm2
SD of the strain means± 0.616 ± 0.547
Coefficient of variation (CV)0.130 0.113
Min–max range of strain means4.30   –   6.06   mm2 3.98   –   5.81   mm2
Mean sample size per strain7.9   mice 10.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.6385 1.6385 6.2196 0.0142
strain 6 11.781 1.9635 7.4532 < 0.0001
sex:strain 6 2.6606 0.4434 1.6832 0.132
Residuals 108 28.4519 0.2634


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.95 0.587   10 0.186 0.118 4.23, 5.97 0.34
129S1/SvImJ m 4.69 0.263   7 0.0995 0.0561 4.3, 5.07 -0.27
AKR/J f 4.48 0.549   4 0.274 0.123 3.81, 5.11 -0.43
AKR/J m 5.17 0.45   15 0.116 0.087 4.44, 5.92 0.6
C3H/HeJ m 3.98 0.594   15 0.153 0.149 3.13, 4.76 -1.57
CBA/J f 4.3 0.597   4 0.298 0.139 3.47, 4.9 -0.72
CBA/J m 4.9 0.492   9 0.164 0.1 4.08, 5.55 0.11
DBA/2J f 4.56 0.36   5 0.161 0.079 4.18, 5.0 -0.3
DBA/2J m 5.12 0.103   2   0.073 0.0202 5.05, 5.2 0.51
FVB/NJ f 4.42 0.534   18 0.126 0.121 3.35, 5.42 -0.52
FVB/NJ m 4.57 0.455   20 0.102 0.0995 3.63, 5.77 -0.49
SJL/J f 6.06 0.132   2   0.0935 0.0218 5.96, 6.15 2.14
SJL/J m 5.81 0.725   3 0.419 0.125 4.97, 6.31 1.77
SM/J f 4.43 0.481   12 0.139 0.109 3.67, 5.25 -0.51
SM/J m 4.48 0.726   11 0.219 0.162 3.37, 6.0 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.9518 0.1623 5.2735 4.6301
129S1/SvImJ m 4.6936 0.194 5.0781 4.309
AKR/J f 4.4792 0.2566 4.9879 3.9706
AKR/J m 5.1743 0.1325 5.437 4.9116
CBA/J f 4.2987 0.2566 4.8074 3.7901
CBA/J m 4.9008 0.1711 5.2399 4.5616
DBA/2J f 4.56 0.2295 5.015 4.105
DBA/2J m 5.123 0.3629 5.8424 4.4036
FVB/NJ f 4.4243 0.121 4.6641 4.1845
FVB/NJ m 4.5745 0.1148 4.802 4.347
SJL/J f 6.0585 0.3629 6.7779 5.3391
SJL/J m 5.807 0.2963 6.3944 5.2196
SM/J f 4.4312 0.1482 4.7249 4.1375
SM/J m 4.4809 0.1548 4.7877 4.1742


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.8227 0.1265 5.0734 4.572
AKR/J both 4.8268 0.1444 5.113 4.5405
CBA/J both 4.5998 0.1542 4.9055 4.2941
DBA/2J both 4.8415 0.2147 5.2671 4.4159
FVB/NJ both 4.4994 0.0834 4.6647 4.3341
SJL/J both 5.9328 0.2343 6.3971 5.4684
SM/J both 4.456 0.1071 4.6684 4.2437




  GWAS USING LINEAR MIXED MODELS