Project measure / variable:   Pletcher1   corticosterone_log

ID, description, units MPD:36005   corticosterone_log   serum corticosterone, log transformed   [log(µg/dL)]  
Data set, strains Pletcher1   inbred   29 strains     sex: m     age: 7-10wks*
Procedure hormone quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Pletcher1 - serum corticosterone, log transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested29 strains
Mean of the strain means0.164   log(µg/dL)
Median of the strain means0.152   log(µg/dL)
SD of the strain means± 0.261
Coefficient of variation (CV)1.59
Min–max range of strain means-0.278   –   0.980   log(µg/dL)
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 6.3994 0.237 1.4665 0.0795
Residuals 143 23.1122 0.1616


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.19 0.605   5 0.271 3.19 -0.3, 0.94 0.1
A/J m 0.235 0.516   4 0.258 2.2 -0.3, 0.89 0.27
AKR/J m 0.311 0.49   8 0.173 1.57 -0.3, 0.94 0.56
BALB/cJ m 0.139 0.318   14 0.085 2.3 -0.28, 0.76 -0.1
BTBR T+ Itpr3tf/J m 0.428 0.474   5 0.212 1.11 -0.3, 0.85 1.01
BUB/BnJ m -0.13 0.332   5 0.149 -2.55 -0.3, 0.46 -1.13
C3H/HeJ m 0.1 0.548   5 0.245 5.48 -0.3, 0.86 -0.25
C57BL/6J m 0.322 0.358   9 0.119 1.11 -0.27, 0.78 0.61
C57BLKS/J m 0.181 0.251   8 0.0887 1.38 -0.12, 0.55 0.06
C58/J m -0.078 0.286   5 0.128 -3.66 -0.3, 0.32 -0.93
CBA/J m 0.131 0.447   9 0.149 3.41 -0.3, 0.72 -0.13
CE/J m 0.152 0.528   6 0.216 3.48 -0.28, 0.99 -0.05
DBA/2J m -0.142 0.237   8 0.0837 -1.66 -0.3, 0.39 -1.18
FVB/NJ m 0.435 0.49   6 0.2 1.13 -0.26, 0.94 1.04
I/LnJ m -0.223 0.0751   3 0.0433 -0.336 -0.3, -0.15 -1.49
LG/J m 0.0433 0.203   6 0.0828 4.68 -0.22, 0.36 -0.46
LP/J m 0.502 0.376   6 0.154 0.75 0.01, 0.84 1.3
MA/MyJ m 0.178 0.522   4 0.261 2.94 -0.3, 0.79 0.05
MRL/MpJ m 0.365 0.442   6 0.18 1.21 -0.3, 0.93 0.77
NOD/ShiLtJ m -0.025 0.379   6 0.155 -15.1 -0.3, 0.61 -0.73
NOR/LtJ m 0.4 0.295   5 0.132 0.737 0.12, 0.88 0.9
NZB/BlNJ m -0.178 0.273   5 0.122 -1.53 -0.3, 0.31 -1.31
NZW/LacJ m -0.278 0.0386   4 0.0193 -0.139 -0.3, -0.22 -1.7
PERA/EiJ m 0.98 0.0   1   0.0 0.0 0.98, 0.98 3.13
PL/J m 0.326 0.522   5 0.234 1.6 -0.28, 0.8 0.62
RIIIS/J m 0.0625 0.358   4 0.179 5.72 -0.3, 0.55 -0.39
SJL/J m 0.015 0.353   6 0.144 23.5 -0.3, 0.46 -0.57
SM/J m 0.242 0.601   5 0.269 2.48 -0.3, 0.93 0.3
SWR/J m 0.0811 0.404   9 0.135 4.98 -0.3, 0.96 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.19 0.1798 0.5454 -0.1654
A/J m 0.235 0.201 0.6323 -0.1623
AKR/J m 0.3113 0.1421 0.5922 0.0303
BALB/cJ m 0.1386 0.1074 0.351 -0.0738
BTBR T+ Itpr3tf/J m 0.428 0.1798 0.7834 0.0726
BUB/BnJ m -0.13 0.1798 0.2254 -0.4854
C3H/HeJ m 0.1 0.1798 0.4554 -0.2554
C57BL/6J m 0.3222 0.134 0.5871 0.0573
C57BLKS/J m 0.1813 0.1421 0.4622 -0.0997
C58/J m -0.078 0.1798 0.2774 -0.4334
CBA/J m 0.1311 0.134 0.396 -0.1338
CE/J m 0.1517 0.1641 0.4761 -0.1728
DBA/2J m -0.1425 0.1421 0.1385 -0.4235
FVB/NJ m 0.435 0.1641 0.7594 0.1106
I/LnJ m -0.2233 0.2321 0.2355 -0.6821
LG/J m 0.0433 0.1641 0.3678 -0.2811
LP/J m 0.5017 0.1641 0.8261 0.1772
MA/MyJ m 0.1775 0.201 0.5748 -0.2198
MRL/MpJ m 0.365 0.1641 0.6894 0.0406
NOD/ShiLtJ m -0.025 0.1641 0.2994 -0.3494
NOR/LtJ m 0.4 0.1798 0.7554 0.0446
NZB/BlNJ m -0.178 0.1798 0.1774 -0.5334
NZW/LacJ m -0.2775 0.201 0.1198 -0.6748
PL/J m 0.326 0.1798 0.6814 -0.0294
RIIIS/J m 0.0625 0.201 0.4598 -0.3348
SJL/J m 0.015 0.1641 0.3394 -0.3094
SM/J m 0.242 0.1798 0.5974 -0.1134
SWR/J m 0.0811 0.134 0.346 -0.1838




  GWAS USING LINEAR MIXED MODELS