Project measure / variable:   Rhodes1   DG_density_control

ID, description, units MPD:34607   DG_density_control   hippocampus: density of new neurons in dentate gyrus   [n/mm3]  control  
exercise study
Data set, strains Rhodes1   inbred   12 strains     sex: both     age: 15wks
Procedure microscopy
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rhodes1 - hippocampus: density of new neurons in dentate gyrus control



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means3.55   n/mm3 3.32   n/mm3
Median of the strain means3.65   n/mm3 2.91   n/mm3
SD of the strain means± 1.26 ± 1.37
Coefficient of variation (CV)0.354 0.411
Min–max range of strain means1.94   –   6.02   n/mm3 1.74   –   6.61   n/mm3
Mean sample size per strain4.0   mice 4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.2827 1.2827 0.8094 0.3713
strain 11 141.4711 12.861 8.1151 < 0.0001
sex:strain 11 10.0128 0.9103 0.5744 0.8435
Residuals 72 114.1077 1.5848


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.0 1.13   4 0.565 0.565 0.753, 3.48 -1.23
129S1/SvImJ m 2.33 0.893   4 0.447 0.383 1.11, 3.06 -0.72
AKR/J f 2.96 0.979   4 0.49 0.331 2.38, 4.42 -0.47
AKR/J m 3.08 1.9   4 0.948 0.615 1.58, 5.77 -0.17
B6129SF1/J f 3.52 1.27   4 0.635 0.361 2.49, 5.13 -0.02
B6129SF1/J m 3.77 0.994   4 0.497 0.263 3.11, 5.24 0.33
B6D2F1/J f 3.92 2.19   4 1.1 0.559 1.67, 5.84 0.3
B6D2F1/J m 3.87 0.695   4 0.348 0.18 3.15, 4.82 0.4
BALB/cByJ f 4.04 1.32   4 0.659 0.326 2.59, 5.76 0.39
BALB/cByJ m 2.43 0.537   4 0.269 0.221 1.72, 2.97 -0.65
BTBR T+ Itpr3tf/J f 4.68 0.995   4 0.497 0.213 3.56, 5.87 0.9
BTBR T+ Itpr3tf/J m 4.08 1.06   4 0.528 0.259 3.51, 5.66 0.56
C57BL/10J f 4.84 0.84   4 0.42 0.173 3.81, 5.81 1.03
C57BL/10J m 4.59 1.73   4 0.865 0.377 2.39, 6.62 0.93
C57BL/6J f 6.02 2.37   4 1.18 0.393 2.8, 8.19 1.97
C57BL/6J m 6.61 0.679   4 0.34 0.103 5.61, 7.04 2.41
CAST/EiJ f 2.23 0.996   4 0.498 0.447 1.13, 3.27 -1.05
CAST/EiJ m 2.59 0.191   4 0.0957 0.0738 2.32, 2.74 -0.53
DBA/2J f 1.94 0.816   4 0.408 0.421 1.07, 2.8 -1.28
DBA/2J m 1.99 0.827   4 0.413 0.415 1.27, 3.17 -0.97
NOD/ShiLtJ f 3.77 2.24   4 1.12 0.595 2.42, 7.12 0.18
NOD/ShiLtJ m 2.73 1.18   4 0.589 0.432 1.31, 3.72 -0.43
SM/J f 2.66 0.703   4 0.352 0.264 1.89, 3.57 -0.71
SM/J m 1.74 0.58   4 0.29 0.333 0.936, 2.32 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.9983 0.6294 3.253 0.7435
129S1/SvImJ m 2.33 0.6294 3.5848 1.0752
AKR/J f 2.9625 0.6294 4.2173 1.7077
AKR/J m 3.085 0.6294 4.3398 1.8302
B6129SF1/J f 3.5225 0.6294 4.7773 2.2677
B6129SF1/J m 3.7725 0.6294 5.0273 2.5177
B6D2F1/J f 3.92 0.6294 5.1748 2.6652
B6D2F1/J m 3.8675 0.6294 5.1223 2.6127
BALB/cByJ f 4.0425 0.6294 5.2973 2.7877
BALB/cByJ m 2.4275 0.6294 3.6823 1.1727
BTBR T+ Itpr3tf/J f 4.68 0.6294 5.9348 3.4252
BTBR T+ Itpr3tf/J m 4.0775 0.6294 5.3323 2.8227
C57BL/10J f 4.8425 0.6294 6.0973 3.5877
C57BL/10J m 4.5925 0.6294 5.8473 3.3377
C57BL/6J f 6.02 0.6294 7.2748 4.7652
C57BL/6J m 6.61 0.6294 7.8648 5.3552
CAST/EiJ f 2.2275 0.6294 3.4823 0.9727
CAST/EiJ m 2.5925 0.6294 3.8473 1.3377
DBA/2J f 1.9375 0.6294 3.1923 0.6827
DBA/2J m 1.99 0.6294 3.2448 0.7352
NOD/ShiLtJ f 3.7675 0.6294 5.0223 2.5127
NOD/ShiLtJ m 2.725 0.6294 3.9798 1.4702
SM/J f 2.6625 0.6294 3.9173 1.4077
SM/J m 1.739 0.6294 2.9938 0.4842


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.1641 0.4451 3.0514 1.2769
AKR/J both 3.0237 0.4451 3.911 2.1365
B6129SF1/J both 3.6475 0.4451 4.5348 2.7602
B6D2F1/J both 3.8938 0.4451 4.781 3.0065
BALB/cByJ both 3.235 0.4451 4.1223 2.3477
BTBR T+ Itpr3tf/J both 4.3788 0.4451 5.266 3.4915
C57BL/10J both 4.7175 0.4451 5.6048 3.8302
C57BL/6J both 6.315 0.4451 7.2023 5.4277
CAST/EiJ both 2.41 0.4451 3.2973 1.5227
DBA/2J both 1.9638 0.4451 2.851 1.0765
NOD/ShiLtJ both 3.2463 0.4451 4.1335 2.359
SM/J both 2.2008 0.4451 3.088 1.3135




  GWAS USING LINEAR MIXED MODELS