Project measure / variable:   Rhodes1   DG_neurons_control

ID, description, units MPD:34605   DG_neurons_control   hippocampus: number of new neurons in dentate gyrus   [n]  control  
exercise study
Data set, strains Rhodes1   inbred   12 strains     sex: both     age: 15wks
Procedure microscopy
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rhodes1 - hippocampus: number of new neurons in dentate gyrus control



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means1393   n 1365   n
Median of the strain means1534   n 1050   n
SD of the strain means± 579 ± 742
Coefficient of variation (CV)0.416 0.544
Min–max range of strain means741   –   2760   n 688   –   3356   n
Mean sample size per strain4.0   mice 4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 18872.0417 18872.0417 0.0612 0.8054
strain 11 35677978.5833 3243452.5985 10.5133 < 0.0001
sex:strain 11 3308291.7083 300753.7917 0.9749 0.4769
Residuals 72 22212757.5 308510.5208


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 781.0 429.0   4 215.0 0.549 300.0, 1338.0 -1.06
129S1/SvImJ m 991.0 231.0   4 116.0 0.233 716.0, 1281.0 -0.5
AKR/J f 970.0 232.0   4 116.0 0.239 771.0, 1306.0 -0.73
AKR/J m 1108.0 781.0   4 391.0 0.705 557.0, 2244.0 -0.35
B6129SF1/J f 1628.0 359.0   4 180.0 0.221 1240.0, 1991.0 0.41
B6129SF1/J m 1985.0 513.0   4 256.0 0.258 1314.0, 2530.0 0.84
B6D2F1/J f 1629.0 1039.0   4 520.0 0.638 731.0, 2685.0 0.41
B6D2F1/J m 1599.0 329.0   4 165.0 0.206 1134.0, 1844.0 0.32
BALB/cByJ f 1616.0 617.0   4 308.0 0.382 873.0, 2236.0 0.39
BALB/cByJ m 943.0 190.0   4 94.8 0.201 705.0, 1142.0 -0.57
BTBR T+ Itpr3tf/J f 1452.0 138.0   4 68.9 0.0948 1297.0, 1608.0 0.1
BTBR T+ Itpr3tf/J m 1301.0 625.0   4 313.0 0.481 806.0, 2211.0 -0.09
C57BL/10J f 1687.0 307.0   4 154.0 0.182 1314.0, 2040.0 0.51
C57BL/10J m 1718.0 770.0   4 385.0 0.448 832.0, 2685.0 0.48
C57BL/6J f 2760.0 1179.0   4 590.0 0.427 1142.0, 3835.0 2.36
C57BL/6J m 3356.0 377.0   4 188.0 0.112 2856.0, 3770.0 2.68
CAST/EiJ f 782.0 439.0   4 220.0 0.561 330.0, 1322.0 -1.05
CAST/EiJ m 974.0 210.0   4 105.0 0.215 732.0, 1240.0 -0.53
DBA/2J f 741.0 329.0   4 165.0 0.444 349.0, 1077.0 -1.13
DBA/2J m 763.0 396.0   4 198.0 0.519 433.0, 1330.0 -0.81
NOD/ShiLtJ f 1660.0 1080.0   4 540.0 0.651 1077.0, 3280.0 0.46
NOD/ShiLtJ m 953.0 241.0   4 120.0 0.253 628.0, 1159.0 -0.56
SM/J f 1008.0 307.0   4 153.0 0.304 614.0, 1363.0 -0.66
SM/J m 688.0 232.0   4 116.0 0.336 353.0, 865.0 -0.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 781.25 277.7186 1334.8719 227.6281
129S1/SvImJ m 991.0 277.7186 1544.6219 437.3781
AKR/J f 970.25 277.7186 1523.8719 416.6281
AKR/J m 1107.75 277.7186 1661.3719 554.1281
B6129SF1/J f 1628.0 277.7186 2181.6219 1074.3781
B6129SF1/J m 1985.25 277.7186 2538.8719 1431.6281
B6D2F1/J f 1628.75 277.7186 2182.3719 1075.1281
B6D2F1/J m 1599.25 277.7186 2152.8719 1045.6281
BALB/cByJ f 1615.75 277.7186 2169.3719 1062.1281
BALB/cByJ m 943.0 277.7186 1496.6219 389.3781
BTBR T+ Itpr3tf/J f 1452.5 277.7186 2006.1219 898.8781
BTBR T+ Itpr3tf/J m 1301.0 277.7186 1854.6219 747.3781
C57BL/10J f 1687.0 277.7186 2240.6219 1133.3781
C57BL/10J m 1717.75 277.7186 2271.3719 1164.1281
C57BL/6J f 2759.75 277.7186 3313.3719 2206.1281
C57BL/6J m 3355.75 277.7186 3909.3719 2802.1281
CAST/EiJ f 782.5 277.7186 1336.1219 228.8781
CAST/EiJ m 974.5 277.7186 1528.1219 420.8781
DBA/2J f 741.25 277.7186 1294.8719 187.6281
DBA/2J m 762.75 277.7186 1316.3719 209.1281
NOD/ShiLtJ f 1660.5 277.7186 2214.1219 1106.8781
NOD/ShiLtJ m 952.75 277.7186 1506.3719 399.1281
SM/J f 1008.25 277.7186 1561.8719 454.6281
SM/J m 688.5 277.7186 1242.1219 134.8781


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 886.125 196.3767 1277.5948 494.6552
AKR/J both 1039.0 196.3767 1430.4698 647.5302
B6129SF1/J both 1806.625 196.3767 2198.0948 1415.1552
B6D2F1/J both 1614.0 196.3767 2005.4698 1222.5302
BALB/cByJ both 1279.375 196.3767 1670.8448 887.9052
BTBR T+ Itpr3tf/J both 1376.75 196.3767 1768.2198 985.2802
C57BL/10J both 1702.375 196.3767 2093.8448 1310.9052
C57BL/6J both 3057.75 196.3767 3449.2198 2666.2802
CAST/EiJ both 878.5 196.3767 1269.9698 487.0302
DBA/2J both 752.0 196.3767 1143.4698 360.5302
NOD/ShiLtJ both 1306.625 196.3767 1698.0948 915.1552
SM/J both 848.375 196.3767 1239.8448 456.9052




  GWAS USING LINEAR MIXED MODELS