Project measure / variable:   Reed1   pct_epididymal

ID, description, units MPD:32606   pct_epididymal   gonadal fat pad weight   [g]  as percent of body weight [%]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure fat pad weights
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  STRAIN COMPARISON PLOT
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Reed1 - gonadal fat pad weight as percent of body weight [%]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means1.90   g
Median of the strain means1.72   g
SD of the strain means± 0.916
Coefficient of variation (CV)0.482
Min–max range of strain means0.555   –   4.54   g
Mean sample size per strain11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 264.038 9.7792 15.6989 < 0.0001
Residuals 295 183.7618 0.6229


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 1.37 0.522   12 0.151 0.38 0.339, 2.41 -0.58
A/J m 1.39 0.575   12 0.166 0.415 0.774, 2.65 -0.56
AKR/J m 3.46 1.32   11 0.397 0.381 1.53, 6.2 1.7
BALB/cByJ m 1.31 0.329   10 0.104 0.252 0.67, 1.85 -0.64
BUB/BnJ m 1.61 0.387   11 0.117 0.24 0.995, 2.31 -0.32
C3H/HeJ m 1.26 0.701   12 0.202 0.557 0.426, 2.9 -0.7
C57BL/6J m 2.66 0.561   11 0.169 0.211 1.52, 3.65 0.83
C57L/J m 1.19 0.347   12 0.1 0.291 0.633, 1.68 -0.77
CAST/EiJ m 0.555 0.401   11 0.121 0.723 -1.47
CBA/J m 4.54 0.936   12 0.27 0.206 2.79, 6.46 2.88
CE/J m 3.65 1.71   12 0.493 0.467 1.09, 7.29 1.91
DBA/2J m 1.87 1.07   12 0.309 0.572 0.557, 4.28 -0.03
FVB/NJ m 2.06 0.632   12 0.182 0.307 1.43, 3.34 0.18
I/LnJ m 0.806 0.622   11 0.188 0.772 0.074, 2.24 -1.19
KK/HlJ m 1.76 0.597   12 0.172 0.339 1.14, 3.22 -0.15
LP/J m 1.36 0.583   12 0.168 0.429 0.643, 2.75 -0.59
NOD/ShiLtJ m 1.68 0.345   10 0.109 0.205 1.16, 2.39 -0.24
NZB/BlNJ m 1.28 0.434   11 0.131 0.338 0.66, 1.87 -0.68
P/J m 1.88 0.64   11 0.193 0.341 0.495, 2.67 -0.02
PL/J m 1.43 0.668   11 0.201 0.465 0.164, 2.69 -0.51
RBF/DnJ m 1.99 1.07   11 0.322 0.538 0.469, 3.31 0.1
RF/J m 3.11 0.876   12 0.253 0.282 2.08, 4.6 1.32
RIIIS/J m 1.85 0.381   12 0.11 0.206 1.05, 2.35 -0.05
SEA/GnJ m 1.79 1.15   12 0.331 0.639 0.46, 4.33 -0.12
SJL/J m 1.61 0.583   12 0.168 0.363 0.414, 2.6 -0.32
SM/J m 2.25 0.878   12 0.254 0.391 1.22, 4.08 0.38
SPRET/EiJ m 2.72 1.15   12 0.333 0.423 0.549, 4.15 0.9
SWR/J m 0.731 0.338   12 0.0977 0.463 0.372, 1.6 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 1.3747 0.2278 1.8231 0.9264
A/J m 1.3879 0.2278 1.8363 0.9395
AKR/J m 3.46 0.238 3.9283 2.9917
BALB/cByJ m 1.3076 0.2496 1.7988 0.8164
BUB/BnJ m 1.6105 0.238 2.0788 1.1421
C3H/HeJ m 1.2584 0.2278 1.7068 0.81
C57BL/6J m 2.6555 0.238 3.1238 2.1871
C57L/J m 1.1927 0.2278 1.6411 0.7444
CAST/EiJ m 0.5551 0.238 1.0234 0.0868
CBA/J m 4.535 0.2278 4.9834 4.0866
CE/J m 3.6525 0.2278 4.1009 3.2041
DBA/2J m 1.8742 0.2278 2.3226 1.4259
FVB/NJ m 2.0567 0.2278 2.5051 1.6083
I/LnJ m 0.8058 0.238 1.2742 0.3375
KK/HlJ m 1.7592 0.2278 2.2076 1.3108
LP/J m 1.3596 0.2278 1.808 0.9112
NOD/ShiLtJ m 1.683 0.2496 2.1742 1.1918
NZB/BlNJ m 1.2819 0.238 1.7502 0.8136
P/J m 1.8786 0.238 2.347 1.4103
PL/J m 1.4347 0.238 1.9031 0.9664
RBF/DnJ m 1.9895 0.238 2.4578 1.5211
RF/J m 3.1092 0.2278 3.5576 2.6608
RIIIS/J m 1.85 0.2278 2.2984 1.4016
SEA/GnJ m 1.7946 0.2278 2.243 1.3462
SJL/J m 1.6053 0.2278 2.0537 1.1569
SM/J m 2.2467 0.2278 2.6951 1.7983
SPRET/EiJ m 2.7243 0.2278 3.1727 2.2759
SWR/J m 0.7308 0.2278 1.1792 0.2824




  GWAS USING LINEAR MIXED MODELS