Project measure / variable:   Reed1   epididymal_fat

ID, description, units MPD:32605   epididymal_fat   gonadal fat pad weight   [g]  weight [g]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure fat pad weights
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  STRAIN COMPARISON PLOT
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Reed1 - gonadal fat pad weight weight [g]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means0.606   g
Median of the strain means0.540   g
SD of the strain means± 0.362
Coefficient of variation (CV)0.598
Min–max range of strain means0.106   –   1.61   g
Mean sample size per strain11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 41.3412 1.5312 15.4023 < 0.0001
Residuals 295 29.3263 0.0994


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 0.37 0.167   12 0.0483 0.452 0.06, 0.69 -0.65
A/J m 0.352 0.17   12 0.0491 0.484 0.17, 0.7 -0.7
AKR/J m 1.22 0.539   11 0.163 0.443 0.5, 2.35 1.7
BALB/cByJ m 0.423 0.125   10 0.0396 0.296 0.21, 0.61 -0.5
BUB/BnJ m 0.539 0.164   11 0.0495 0.304 0.28, 0.85 -0.18
C3H/HeJ m 0.349 0.224   12 0.0648 0.643 0.1, 0.9 -0.71
C57BL/6J m 0.824 0.21   11 0.0634 0.255 0.44, 1.26 0.6
C57L/J m 0.346 0.118   12 0.0342 0.342 0.17, 0.55 -0.72
CAST/EiJ m 0.106 0.0797   11 0.024 0.749 -1.38
CBA/J m 1.61 0.472   12 0.136 0.294 0.74, 2.52 2.77
CE/J m 1.41 0.789   12 0.228 0.56 0.34, 3.09 2.22
DBA/2J m 0.548 0.366   12 0.106 0.668 0.16, 1.39 -0.16
FVB/NJ m 0.607 0.236   12 0.0682 0.389 0.4, 1.1 0.0
I/LnJ m 0.238 0.193   11 0.0581 0.809 0.02, 0.68 -1.02
KK/HlJ m 0.723 0.228   12 0.0659 0.316 0.43, 1.28 0.32
LP/J m 0.393 0.193   12 0.0557 0.491 0.15, 0.83 -0.59
NOD/ShiLtJ m 0.547 0.128   10 0.0404 0.234 0.36, 0.81 -0.16
NZB/BlNJ m 0.467 0.178   11 0.0537 0.381 0.21, 0.71 -0.38
P/J m 0.54 0.22   11 0.0664 0.408 0.11, 0.8 -0.18
PL/J m 0.365 0.189   11 0.057 0.517 0.04, 0.78 -0.66
RBF/DnJ m 0.791 0.493   11 0.149 0.624 0.15, 1.47 0.51
RF/J m 1.21 0.443   12 0.128 0.366 0.65, 1.98 1.67
RIIIS/J m 0.401 0.0921   12 0.0266 0.23 0.2, 0.49 -0.57
SEA/GnJ m 0.659 0.528   12 0.152 0.801 0.11, 1.85 0.15
SJL/J m 0.462 0.179   12 0.0517 0.387 0.11, 0.73 -0.4
SM/J m 0.647 0.287   12 0.0829 0.444 0.34, 1.34 0.11
SPRET/EiJ m 0.617 0.304   12 0.0877 0.493 0.09, 1.06 0.03
SWR/J m 0.193 0.0903   12 0.0261 0.467 0.1, 0.42 -1.14


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 0.37 0.091 0.5491 0.1909
A/J m 0.3517 0.091 0.5308 0.1725
AKR/J m 1.2173 0.0951 1.4044 1.0302
BALB/cByJ m 0.423 0.0997 0.6192 0.2268
BUB/BnJ m 0.5391 0.0951 0.7262 0.352
C3H/HeJ m 0.3492 0.091 0.5283 0.17
C57BL/6J m 0.8236 0.0951 1.0107 0.6365
C57L/J m 0.3458 0.091 0.525 0.1667
CAST/EiJ m 0.1064 0.0951 0.2935 0.0
CBA/J m 1.6058 0.091 1.785 1.4267
CE/J m 1.4092 0.091 1.5883 1.23
DBA/2J m 0.5483 0.091 0.7275 0.3692
FVB/NJ m 0.6067 0.091 0.7858 0.4275
I/LnJ m 0.2382 0.0951 0.4253 0.0511
KK/HlJ m 0.7233 0.091 0.9025 0.5442
LP/J m 0.3933 0.091 0.5725 0.2142
NOD/ShiLtJ m 0.547 0.0997 0.7432 0.3508
NZB/BlNJ m 0.4673 0.0951 0.6544 0.2802
P/J m 0.54 0.0951 0.7271 0.3529
PL/J m 0.3655 0.0951 0.5525 0.1784
RBF/DnJ m 0.7909 0.0951 0.978 0.6038
RF/J m 1.2117 0.091 1.3908 1.0325
RIIIS/J m 0.4008 0.091 0.58 0.2217
SEA/GnJ m 0.6592 0.091 0.8383 0.48
SJL/J m 0.4625 0.091 0.6416 0.2834
SM/J m 0.6467 0.091 0.8258 0.4675
SPRET/EiJ m 0.6167 0.091 0.7958 0.4375
SWR/J m 0.1933 0.091 0.3725 0.0142




  GWAS USING LINEAR MIXED MODELS